Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr9P22400_001 | Banana | cytosol | 19.76 | 88.3 |
Zm00001d044810_P001 | Maize | nucleus | 14.27 | 84.5 |
HORVU0Hr1G022460.1 | Barley | nucleus | 48.95 | 76.48 |
KXG20501 | Sorghum | nucleus | 64.4 | 74.89 |
TraesCS7B01G416400.1 | Wheat | nucleus | 47.91 | 74.85 |
VIT_04s0008g05780.t01 | Wine grape | nucleus | 66.1 | 74.7 |
TraesCS5D01G324200.2 | Wheat | nucleus | 63.74 | 74.24 |
HORVU7Hr1G113760.2 | Barley | nucleus | 63.74 | 74.24 |
TraesCS5A01G317800.1 | Wheat | nucleus | 63.74 | 74.24 |
Os06t0649500-01 | Rice | nucleus | 63.48 | 74.16 |
TraesCS5B01G318400.1 | Wheat | nucleus | 63.61 | 74.09 |
TraesCS7A01G508300.2 | Wheat | nucleus | 63.61 | 74.09 |
TraesCS7D01G496500.1 | Wheat | nucleus | 62.57 | 73.43 |
Zm00001d046810_P002 | Maize | nucleus | 64.4 | 73.11 |
Zm00001d053142_P001 | Maize | nucleus | 15.18 | 72.05 |
GSMUA_Achr9P22410_001 | Banana | cytosol | 35.08 | 71.85 |
KRH52333 | Soybean | nucleus | 62.04 | 71.49 |
Solyc06g065700.2.1 | Tomato | nucleus | 63.74 | 71.09 |
KRH61671 | Soybean | nucleus | 62.04 | 70.85 |
Zm00001d025112_P001 | Maize | cytosol, nucleus, plastid | 16.88 | 70.49 |
AT5G25150.1 | Thale cress | nucleus | 60.6 | 69.21 |
CDY19814 | Canola | nucleus | 60.47 | 69.16 |
Bra036534.1-P | Field mustard | nucleus | 60.34 | 69.01 |
CDX87098 | Canola | nucleus | 59.95 | 68.56 |
CDY05473 | Canola | nucleus | 58.9 | 67.57 |
Bra020485.1-P | Field mustard | nucleus | 58.77 | 67.42 |
CDY05378 | Canola | nucleus | 58.51 | 67.32 |
Zm00001d016330_P001 | Maize | extracellular | 12.7 | 66.9 |
KRH05348 | Soybean | nucleus | 56.54 | 65.65 |
KRG99418 | Soybean | cytosol, extracellular, plastid | 7.33 | 64.37 |
KRH15679 | Soybean | cytosol | 8.64 | 51.97 |
GSMUA_Achr2P01810_001 | Banana | cytosol | 10.73 | 25.55 |
GSMUA_Achr5P26190_001 | Banana | cytosol | 9.82 | 21.55 |
GSMUA_Achr6P34790_001 | Banana | extracellular | 4.32 | 21.15 |
GSMUA_Achr11P... | Banana | nucleus | 11.39 | 19.91 |
GSMUA_Achr6P34780_001 | Banana | cytosol | 8.9 | 14.5 |
GSMUA_Achr11P... | Banana | mitochondrion | 15.45 | 12.81 |
GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 13.87 | 11.28 |
Protein Annotations
Gene3D:1.25.40.500 | MapMan:15.3.4.3.1 | MapMan:15.3.5.3.5 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr7G26980_001 | EnsemblPlants:GSMUA_Achr7P26980_001 | EnsemblPlants:GSMUA_Achr7T26980_001 |
InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:IPR037264 | InterPro:LisH |
UniProt:M0TL34 | PFAM:PF00400 | PFAM:PF04494 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
PFscan:PS50294 | PFscan:PS50896 | PANTHER:PTHR19879 | PANTHER:PTHR19879:SF1 | SMART:SM00320 | SUPFAM:SSF160897 |
SUPFAM:SSF50978 | InterPro:TFIID_NTD2 | InterPro:TFIID_NTD2_sf | UniParc:UPI000296182E | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
Putative Transcription initiation factor TFIID subunit 5 [Source:GMGC_GENE;Acc:GSMUA_Achr7G26980_001]
Coordinates
chr7:+:28151979..28169454
Molecular Weight (calculated)
85402.8 Da
IEP (calculated)
6.641
GRAVY (calculated)
-0.244
Length
764 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEELQKAV VAYLRKKGFA KTEIALQEEQ QNRLSSSSHP DLPLSRLEND PARYSGGYSK LRSWAYSSLD LYKHELLRVL YSVYIHCFMD LVAEGHMRDA
101: RTFFQTFRED HELTHLRDLQ KLEGILSPSH LEEMELARSL RQNKVKIKIC QYAYDLLLQY LQKTQSLTIL GIINERINFE VSPGQPISIS DDMEVVALVG
201: SNHDQAKQIN QKEVRWGLLE DSVEDRLERA NSDSEKAEAE NKELDPEDTK AINRKRSVDG GKQAAPVKKP KKDKLVGATG KNVRSETSTA PVAPRVKPDL
301: TLPIMPMEVE KAILEDLRNR VQLSSSALPS ICFYTFINAH NGLNCSAISH DGSLVAGGFS DSSLKVWDMS KIGQSAKPVS ITLEGFLKYV EPRDAISNHA
401: CLANQILIVF SQTNWASWLV DFYSLLIVVL PHLAQPDLIC CQPKLSNMEE IFLHAGTQDF YGTYLTCYAC GNFLCCLSFH SILFNLQGEN DSIPSEHFLG
501: TEGEGPYTLF HGHSGPIYSA TFSPLGDFLL SSSSDSTIRL WSTNLNANLV CYKGHNYPVW DVQFSPVGHY FASSSHDRTA RIWSMDRIQP LRIMAGHLSD
601: VDCVQWHANC NYVATGSSDK TVRLWDVQSG ECVRIFIGHR STVLSLAMSP DGRFMASGDE DGTIMMWDLS SGRCISPLMG HSSCVWTLAF SREGSLLASG
701: AADCTVKLWD VTTSMKGQKI EESKPSSINR LRLLKALPTK STPVYTLQFS RRNLLFAAGA LSKC
101: RTFFQTFRED HELTHLRDLQ KLEGILSPSH LEEMELARSL RQNKVKIKIC QYAYDLLLQY LQKTQSLTIL GIINERINFE VSPGQPISIS DDMEVVALVG
201: SNHDQAKQIN QKEVRWGLLE DSVEDRLERA NSDSEKAEAE NKELDPEDTK AINRKRSVDG GKQAAPVKKP KKDKLVGATG KNVRSETSTA PVAPRVKPDL
301: TLPIMPMEVE KAILEDLRNR VQLSSSALPS ICFYTFINAH NGLNCSAISH DGSLVAGGFS DSSLKVWDMS KIGQSAKPVS ITLEGFLKYV EPRDAISNHA
401: CLANQILIVF SQTNWASWLV DFYSLLIVVL PHLAQPDLIC CQPKLSNMEE IFLHAGTQDF YGTYLTCYAC GNFLCCLSFH SILFNLQGEN DSIPSEHFLG
501: TEGEGPYTLF HGHSGPIYSA TFSPLGDFLL SSSSDSTIRL WSTNLNANLV CYKGHNYPVW DVQFSPVGHY FASSSHDRTA RIWSMDRIQP LRIMAGHLSD
601: VDCVQWHANC NYVATGSSDK TVRLWDVQSG ECVRIFIGHR STVLSLAMSP DGRFMASGDE DGTIMMWDLS SGRCISPLMG HSSCVWTLAF SREGSLLASG
701: AADCTVKLWD VTTSMKGQKI EESKPSSINR LRLLKALPTK STPVYTLQFS RRNLLFAAGA LSKC
001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
Arabidopsis Description
TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.