CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH02410
KRH05348
KRH05606
KRH06174
KRH15434
KRH15679
KRH19914
KRH24348
KRH30849
KRH32528
KRH32724
KRH39697
KRH47589
KRH50675
KRH52077
KRH52333
KRH61389
KRH61671
KRH62676
KRH73515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	KRH06174	AT1G17440.1	17340043
AT5G25150.1	KRH47589	AT1G17440.1	17340043
AT5G25150.1	KRH05606	AT1G27720.1	17340043
AT5G25150.1	KRH15434	AT1G27720.1	17340043
AT5G25150.1	KRH52077	AT1G27720.1	17340043
AT5G25150.1	KRH61389	AT1G27720.1	17340043
AT5G25150.1	KRH39697	AT1G32750.1	17340043
AT5G25150.1	KRH62676	AT1G32750.1	17340043
AT5G25150.1	KRH02410	AT1G54140.1	17340043
AT5G25150.1	KRH50675	AT1G54140.1	17340043
AT5G25150.1	KRH73515	AT1G54140.1	17340043
AT5G25150.1	KRH30849	AT3G10070.1	17340043
AT5G25150.1	KRH32724	AT3G10070.1	17340043
AT5G25150.1	KRH19914	AT4G34340.1	17340043
AT5G25150.1	KRH32528	AT4G34340.1	17340043
AT5G25150.1	KRG99418	AT5G25150.1	17340043
AT5G25150.1	KRH05348	AT5G25150.1	17340043
AT5G25150.1	KRH15679	AT5G25150.1	17340043
AT5G25150.1	KRH52333	AT5G25150.1	17340043
AT5G25150.1	KRH61671	AT5G25150.1	17340043
AT5G25150.1	KRH24348	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99418	Soybean	cytosol, extracellular, plastid	41.73	60.92
GSMUA_Achr9P22400_001	Banana	cytosol	52.76	39.18
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	48.82	33.88
Zm00001d044810_P001	Maize	nucleus	29.92	29.46
Zm00001d016330_P001	Maize	extracellular	29.13	25.52
TraesCS7B01G416400.1	Wheat	nucleus	52.76	13.7
HORVU0Hr1G022460.1	Barley	nucleus	51.97	13.5
KRH05348	Soybean	nucleus	57.48	11.09
KRH52333	Soybean	nucleus	53.54	10.26
Solyc06g065700.2.1	Tomato	nucleus	55.12	10.22
CDY19814	Canola	nucleus	53.54	10.18
Bra036534.1-P	Field mustard	nucleus	53.54	10.18
AT5G25150.1	Thale cress	nucleus	53.54	10.16
CDY05378	Canola	nucleus	52.76	10.09
HORVU7Hr1G113760.2	Barley	nucleus	51.97	10.06
TraesCS5B01G318400.1	Wheat	nucleus	51.97	10.06
TraesCS5A01G317800.1	Wheat	nucleus	51.97	10.06
TraesCS5D01G324200.2	Wheat	nucleus	51.97	10.06
TraesCS7A01G508300.2	Wheat	nucleus	51.97	10.06
VIT_04s0008g05780.t01	Wine grape	nucleus	53.54	10.06
CDX87098	Canola	nucleus	52.76	10.03
KRH61671	Soybean	nucleus	52.76	10.01
Os06t0649500-01	Rice	nucleus	51.18	9.94
CDY05473	Canola	nucleus	51.97	9.91
Bra020485.1-P	Field mustard	nucleus	51.97	9.91
TraesCS7D01G496500.1	Wheat	nucleus	50.39	9.83
KXG20501	Sorghum	nucleus	49.61	9.59
Zm00001d046810_P002	Maize	nucleus	50.39	9.51
KRH04500	Soybean	cytosol	20.47	9.29
GSMUA_Achr7P26980_001	Banana	nucleus	51.97	8.64
KRH04498	Soybean	mitochondrion	17.32	8.43
Zm00001d053142_P001	Maize	nucleus	10.24	8.07
KRH67917	Soybean	cytosol	18.9	7.0
KRH02663	Soybean	cytosol, nucleus	17.32	6.85
KRH19247	Soybean	cytosol, endoplasmic reticulum	17.32	6.85
KRH61363	Soybean	nucleus	22.83	5.11
KRH72083	Soybean	nucleus	22.05	4.91
KRH31616	Soybean	nucleus	21.26	4.74
KRH28415	Soybean	nucleus	20.47	4.66
KRH52050	Soybean	cytosol, nucleus, peroxisome	22.83	4.54
KRH58014	Soybean	nucleus	21.26	4.33
KRG94333	Soybean	cytosol	5.51	3.47
KRH03286	Soybean	nucleus	19.68	2.84
KRH67774	Soybean	nucleus, plastid	20.47	2.76
KRG96051	Soybean	nucleus	20.47	2.75
KRH33352	Soybean	plastid	3.94	1.97
KRH57076	Soybean	plasma membrane	11.02	1.65
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	4.72	1.34
GSMUA_Achr9P22410_001	Banana	cytosol	1.57	0.54
KRH04503	Soybean	nucleus	0.0	0.0

Protein Annotations

EntrezGene:102662777	Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A0R0GNC4	EMBL:ACUP02008628	EnsemblPlantsGene:GLYMA_14G103600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH15679	ProteinID:KRH15679	ProteinID:KRH15679.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19879	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0003DE8D9B	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr14:+:10446975..10448046

Molecular Weight (calculated)

13514.3 Da

IEP (calculated)

4.006

GRAVY (calculated)

0.502

Length

127 amino acids

Sequence
(BLAST)

001: MILSLAMSPD GLNLASGDED GTIMIWDLSS GCCITPLVGH TSCVWSLTFS CEGSLLASGS ADCTVKFGDV TTEVGILTDS DHRKACLPNL LQFTLSSFLE
101: GIFFLQLELL QKVADSVSSN FKVTILT

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.