CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH05348
KRH05606
KRH06174
KRH15434
KRH15679
KRH19914
KRH24217
KRH24348
KRH29220
KRH30849
KRH31624
KRH31641
KRH31820
KRH32528
KRH32724
KRH39697
KRH47589
KRH52077
KRH52333
KRH61389
KRH61671
KRH62676
KRH62947
KRH64870
KRH75898

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	KRH31624	AT1G02680.1	17340043
AT1G17440.1	KRH31641	AT1G02680.1	17340043
AT1G17440.1	KRH31820	AT1G02680.1	17340043
AT1G17440.1	KRH06174	AT1G17440.1	17340043
AT1G17440.1	KRH47589	AT1G17440.1	17340043
AT1G17440.1	KRH05606	AT1G27720.1	17340043
AT1G17440.1	KRH15434	AT1G27720.1	17340043
AT1G17440.1	KRH52077	AT1G27720.1	17340043
AT1G17440.1	KRH61389	AT1G27720.1	17340043
AT1G17440.1	KRH39697	AT1G32750.1	17340043
AT1G17440.1	KRH62676	AT1G32750.1	17340043
AT1G17440.1	KRH24217	AT1G50300.1	17340043
AT1G17440.1	KRH29220	AT1G50300.1	17340043
AT1G17440.1	KRH62947	AT1G50300.1	17340043
AT1G17440.1	KRH75898	AT1G50300.1	17340043
AT1G17440.1	KRH30849	AT3G10070.1	17340043
AT1G17440.1	KRH32724	AT3G10070.1	17340043
AT1G17440.1	KRH64870	AT4G20280.1	17340043
AT1G17440.1	KRH19914	AT4G34340.1	17340043
AT1G17440.1	KRH32528	AT4G34340.1	17340043
AT1G17440.1	KRG99418	AT5G25150.1	17340043
AT1G17440.1	KRH05348	AT5G25150.1	17340043
AT1G17440.1	KRH15679	AT5G25150.1	17340043
AT1G17440.1	KRH52333	AT5G25150.1	17340043
AT1G17440.1	KRH61671	AT5G25150.1	17340043
AT1G17440.1	KRH24348	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012398	Potato	nucleus	28.94	53.16
Solyc06g062900.2.1	Tomato	nucleus	32.38	47.08
KRH47589	Soybean	nucleus, plastid	75.64	44.07
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	55.59	33.05
Solyc03g122020.2.1	Tomato	nucleus, plastid	54.15	29.44
PGSC0003DMT400006601	Potato	nucleus, plastid	53.01	28.95
CDY26245	Canola	plastid	51.0	27.34
Bra025975.1-P	Field mustard	plastid	49.57	26.74
CDX81826	Canola	plastid	40.4	26.21
CDY21749	Canola	plastid	41.55	25.89
AT1G17440.1	Thale cress	plastid	49.0	25.04
Zm00001d042879_P002	Maize	plastid	33.81	24.89
GSMUA_Achr7P10670_001	Banana	plastid	45.85	24.88
Os01t0846900-01	Rice	nucleus	37.54	24.17
Bra030989.1-P	Field mustard	plastid	42.12	24.14
TraesCS3B01G395300.2	Wheat	nucleus, plastid	37.25	24.12
TraesCS3A01G362900.1	Wheat	nucleus, plastid	37.54	24.04
CDY48302	Canola	plastid	40.69	23.99
TraesCS6D01G151600.1	Wheat	nucleus, plastid	28.65	23.92
TraesCS3D01G356600.1	Wheat	nucleus, plastid	36.96	23.8
HORVU6Hr1G032840.2	Barley	nucleus, plastid	27.79	23.15
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	37.82	23.12
Zm00001d012396_P003	Maize	nucleus, plastid	34.96	22.14
KXG33694	Sorghum	nucleus, plastid	34.96	22.02
KRH30849	Soybean	nucleus, plastid	26.93	18.54
KRH32724	Soybean	nucleus, plastid	26.65	18.34
TraesCS6A01G161300.1	Wheat	nucleus, plastid	21.49	17.86
TraesCS6B01G190100.1	Wheat	nucleus, plastid	20.92	17.46

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	UniProt:A0A0R0FJI2	EMBL:ACUP02009816	EnsemblPlantsGene:GLYMA_16G007000
GO:GO:0000124	GO:GO:0001102	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KRH06174	ProteinID:KRH06174	ProteinID:KRH06174.1	PFAM:PD012998
PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom
UniParc:UPI0006ED9C62	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:573026..580402

Molecular Weight (calculated)

37803.8 Da

IEP (calculated)

9.769

GRAVY (calculated)

-0.710

Length

349 amino acids

Sequence
(BLAST)

001: MAETASSKPS PRTHKFKTPQ HSPIPSPPSH NMNPISNPCS ESPSLSRLNQ IQTQQHPGLY GGQMGQRGHF PMLFGNSAGP SLQGMQAMGM MGSPNLTSQL
101: RANGAMVYAQ QLRMSQGQIR QQLSQQGSLN TAQPQQQPQQ ASVHQQQQSP RMPGPAGQKS LSLTGSQPDA TASGATTPGG SSSQGTEATN QVLGKRKIQD
201: LVGQVDPQGR LNPEVIDLLL ELADDFLDSA TTHGCVLAKH RKSSTLESND LLLHLENWDL KIPGYSSEEK KNQNKPLLND LHKRRLDMVR TLMESLPSES
301: SVNSSKEMSI QGISNPPPVG THHLVRPLSS EQLISHAAGS QMLQQMTRF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.