CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX78982
CDX81826
CDX84083
CDX87098
CDX89953
CDY00904
CDY03594
CDY03944
CDY05378
CDY05473
CDY15256
CDY15437
CDY19814
CDY21749
CDY22214
CDY22787
CDY26245
CDY31444
CDY38963
CDY39435
CDY41320
CDY42510
CDY44660
CDY48302
CDY60164
CDY60273
CDY67548
CDY67613
CDY69783
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	CDX89953	AT1G02680.1	17340043
AT1G17440.1	CDY15256	AT1G02680.1	17340043
AT1G17440.1	CDY15437	AT1G02680.1	17340043
AT1G17440.1	CDY71056	AT1G02680.1	17340043
AT1G17440.1	CDX81826	AT1G17440.1	17340043
AT1G17440.1	CDY21749	AT1G17440.1	17340043
AT1G17440.1	CDY26245	AT1G17440.1	17340043
AT1G17440.1	CDY48302	AT1G17440.1	17340043
AT1G17440.1	CDY03944	AT1G27720.1	17340043
AT1G17440.1	CDY60273	AT1G27720.1	17340043
AT1G17440.1	CDX84083	AT1G32750.1	17340043
AT1G17440.1	CDY44660	AT1G32750.1	17340043
AT1G17440.1	CDY03594	AT1G50300.1	17340043
AT1G17440.1	CDY22787	AT1G50300.1	17340043
AT1G17440.1	CDY42510	AT1G50300.1	17340043
AT1G17440.1	CDY67548	AT1G50300.1	17340043
AT1G17440.1	CDY00904	AT3G10070.1	17340043
AT1G17440.1	CDY22214	AT3G10070.1	17340043
AT1G17440.1	CDY41320	AT3G10070.1	17340043
AT1G17440.1	CDY60164	AT3G10070.1	17340043
AT1G17440.1	CDX78982	AT4G20280.1	17340043
AT1G17440.1	CDY31444	AT4G20280.1	17340043
AT1G17440.1	CDY67613	AT4G20280.1	17340043
AT1G17440.1	CDX75423	AT4G34340.1	17340043
AT1G17440.1	CDY69783	AT4G34340.1	17340043
AT1G17440.1	CDX87098	AT5G25150.1	17340043
AT1G17440.1	CDY05378	AT5G25150.1	17340043
AT1G17440.1	CDY05473	AT5G25150.1	17340043
AT1G17440.1	CDY19814	AT5G25150.1	17340043
AT1G17440.1	CDY38963	AT5G45600.1	17340043
AT1G17440.1	CDY39435	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030989.1-P	Field mustard	plastid	70.82	62.56
CDY21749	Canola	plastid	60.41	58.04
PGSC0003DMT400012398	Potato	nucleus	17.29	48.95
CDY26245	Canola	plastid	56.13	46.39
Solyc06g062900.2.1	Tomato	nucleus	20.63	46.25
AT1G17440.1	Thale cress	plastid	55.95	44.07
CDY48302	Canola	plastid	46.1	41.89
KRH06174	Soybean	nucleus, plastid	26.21	40.4
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	41.08	37.65
KRH47589	Soybean	nucleus, plastid	38.85	34.89
PGSC0003DMT400006601	Potato	nucleus, plastid	40.33	33.96
Solyc03g122020.2.1	Tomato	nucleus, plastid	39.59	33.18
Zm00001d042879_P002	Maize	plastid	28.44	32.28
GSMUA_Achr7P10670_001	Banana	plastid	38.29	32.04
TraesCS3B01G395300.2	Wheat	nucleus, plastid	30.11	30.06
Os01t0846900-01	Rice	nucleus	30.11	29.89
Zm00001d012396_P003	Maize	nucleus, plastid	30.48	29.76
TraesCS3A01G362900.1	Wheat	nucleus, plastid	29.93	29.54
TraesCS3D01G356600.1	Wheat	nucleus, plastid	29.74	29.52
KXG33694	Sorghum	nucleus, plastid	29.74	28.88
TraesCS6D01G151600.1	Wheat	nucleus, plastid	22.3	28.71
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	30.11	28.37
HORVU6Hr1G032840.2	Barley	nucleus, plastid	21.75	27.92
TraesCS6A01G161300.1	Wheat	nucleus, plastid	16.91	21.67
TraesCS6B01G190100.1	Wheat	nucleus, plastid	16.36	21.05
CDY00904	Canola	nucleus, plastid	20.07	20.49
CDY60164	Canola	nucleus, plastid	19.89	20.3
CDY41320	Canola	plastid	10.97	17.1
CDY22214	Canola	plastid	10.78	17.01

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:A0A078CXB5	EnsemblPlants:CDX81826	ProteinID:CDX81826
ProteinID:CDX81826.1	GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695
GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00136770001	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998	PFAM:PF03847
PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0004EDE1D1
SEG:seg	:	:	:	:	:

Description

BnaC08g37750D

Coordinates

chrLK031826:-:1009866..1012761

Molecular Weight (calculated)

58524.4 Da

IEP (calculated)

10.890

GRAVY (calculated)

-0.661

Length

538 amino acids

Sequence
(BLAST)

001: MSPRPLQSPN PMEPSLTSSA PPPSSSQQQR QRHVTAPISN SAASPATALT TTEGVIQQLP IMQQSPMSNY HIAQTPSVSR MNHIQQQQGQ YGDVLRQQAA
101: MDFVGGSGQS GHLSMLSGGA AAAHMNIHHS QSLLPSSPRQ QSGLVHGSQF HPGSSEHQLH GIGVMDSLIL RSQMRANPAL YPQHRTNPGQ MRSQQHLLTL
201: PQVQNFQRTP SLAFINAQLS GLAQNGQAGM VQNSLTQQRQ WLKLISEINS PNSQSFRLQP SQRQALLLQQ QFPSAQLHQN SNSMPLNQQQ ISHIIHQQSQ
301: MNQAQMNPSQ PQQMQQMPIN QQQSSPRMPS NAGQRSVSVT GSQPDGTEPG ATTPGVVRSS QGPEATNQLL GKRKLQDLLS QVDAHAKLDP DVEDLLLELA
401: DDFLDSVTSF ACRLAKHRKS TVLEPKDVLL HLEKNLQLAV PGFSSQNKHQ TKNIPTDLHK KRIAMGQKLR ALVESSPPGN NASNSKETIR QVMVNPNGAN
501: HLSRPSPSSE QLVSQKPGPP SKRNSIGQVV GSGLINLS

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.