Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013452.1-P | Field mustard | nucleus | 86.03 | 97.04 |
| CDX78982 | Canola | nucleus | 86.03 | 97.04 |
| AT4G20280.1 | Thale cress | nucleus | 64.63 | 70.48 |
| VIT_19s0093g00470.t01 | Wine grape | nucleus | 53.71 | 62.12 |
| GSMUA_Achr9P06160_001 | Banana | nucleus | 52.84 | 60.8 |
| CDY31444 | Canola | nucleus | 41.92 | 60.0 |
| Solyc05g010570.2.1 | Tomato | nucleus | 43.23 | 58.24 |
| KRH64870 | Soybean | nucleus | 51.09 | 57.92 |
| Os01t0680400-01 | Rice | nucleus | 52.4 | 56.87 |
| PGSC0003DMT400050569 | Potato | nucleus | 51.53 | 56.19 |
| Solyc05g018120.1.1 | Tomato | nucleus | 51.53 | 56.19 |
| EES01269 | Sorghum | nucleus | 50.66 | 55.5 |
| TraesCS3D01G267500.1 | Wheat | nucleus | 50.22 | 53.24 |
| TraesCS3A01G267300.1 | Wheat | nucleus | 49.78 | 52.78 |
| HORVU3Hr1G062710.1 | Barley | nucleus | 49.34 | 52.31 |
| Zm00001d011605_P001 | Maize | nucleus | 49.78 | 41.61 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.11 | GO:A0A078JJ56 | UniProt:A0A078JJ56 | EnsemblPlants:CDY67613 | ProteinID:CDY67613 |
| ProteinID:CDY67613.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006367 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00065201001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF04719 | PANTHER:PTHR13218 | PANTHER:PTHR13218:SF14 |
| SUPFAM:SSF47113 | InterPro:TAFII28 | TMHMM:TMhelix | UniParc:UPI0004EEC5CC | SEG:seg | : |
Description
BnaCnng55660DBnaCnng55660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJ56]
Coordinates
chrLK036316:+:633..2190
Molecular Weight (calculated)
26076.1 Da
IEP (calculated)
5.008
GRAVY (calculated)
-0.661
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHSKDPFEA AIEEEQEESP PESPAGGGDD EEGRLEIEQA PEESERDVGV RRQPKKFKSS VAVAEGKNKD EDEEEEEENM EAELTKYPTT ADPAKMAKMQ
101: VILSQFTEDQ MSRYESFRRS AFQKGNMRKL LQGVTGSQKI SMPVIIVNCG IAKMFVGELV ETARVVMGER NDSGPIRPCH IRESYRRLKL EGKAPKRSVP
201: HLFAFYVLVW WTIYIWFQTI IAKMITNGV
101: VILSQFTEDQ MSRYESFRRS AFQKGNMRKL LQGVTGSQKI SMPVIIVNCG IAKMFVGELV ETARVVMGER NDSGPIRPCH IRESYRRLKL EGKAPKRSVP
201: HLFAFYVLVW WTIYIWFQTI IAKMITNGV
001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
Arabidopsis Description
TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.