Factsheet for Bra013452.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025975.1-P
Bra029816.1-P
Bra030508.1-P
Bra030989.1-P
Bra033338.1-P
Bra034092.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	Bra030508.1-P	AT1G02680.1	17340043
AT4G20280.1	Bra033338.1-P	AT1G02680.1	17340043
AT4G20280.1	Bra025975.1-P	AT1G17440.1	17340043
AT4G20280.1	Bra030989.1-P	AT1G17440.1	17340043
AT4G20280.1	Bra029816.1-P	AT3G10070.1	17340043
AT4G20280.1	Bra034092.1-P	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78982	Canola	nucleus	99.51	99.51
CDY67613	Canola	nucleus	97.04	86.03
AT4G20280.1	Thale cress	nucleus	73.4	70.95
VIT_19s0093g00470.t01	Wine grape	nucleus	62.07	63.64
GSMUA_Achr9P06160_001	Banana	nucleus	61.08	62.31
KRH64870	Soybean	nucleus	59.61	59.9
Solyc05g010570.2.1	Tomato	nucleus	49.75	59.41
Os01t0680400-01	Rice	nucleus	60.59	58.29
PGSC0003DMT400050569	Potato	nucleus	59.11	57.14
Solyc05g018120.1.1	Tomato	nucleus	59.11	57.14
EES01269	Sorghum	nucleus	57.64	55.98
TraesCS3A01G267300.1	Wheat	nucleus	58.13	54.63
TraesCS3D01G267500.1	Wheat	nucleus	57.64	54.17
HORVU3Hr1G062710.1	Barley	nucleus	56.65	53.24
Zm00001d011605_P001	Maize	nucleus	56.65	41.97

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	EnsemblPlantsGene:Bra013452	EnsemblPlants:Bra013452.1	EnsemblPlants:Bra013452.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006367	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4DAE2	PFAM:PF04719
PANTHER:PTHR13218	PANTHER:PTHR13218:SF14	SUPFAM:SSF47113	InterPro:TAFII28	UniParc:UPI00025469F1	SEG:seg

Description

AT4G20280 (E=1e-061) TAF11 | TAF11 (TBP-ASSOCIATED FACTOR 11); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor

Coordinates

chrA01:+:5756309..5757138

Molecular Weight (calculated)

23020.3 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.912

Length

203 amino acids

Sequence
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPAGGGDD EGRLEIEQTP EESERDVGVR RQPKKFKSSV AVAEGKNKDE DEEEEEENME AELTKYPTTA DPAKMAKMQV
101: ILSQFTEDQM SRYESFRRSA FQKGNMRKLL QGVTGSQKIS MPVIIVNCGI AKMFVGELVE TARVVMGERN DSGPIRPCHI RESYRRLKLE GKVPKRSVPR
201: LFR

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.