Factsheet for AT4G20280.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013452.1-P	Field mustard	nucleus	70.95	73.4
CDX78982	Canola	nucleus	70.48	72.91
VIT_19s0093g00470.t01	Wine grape	nucleus	64.29	68.18
CDY67613	Canola	nucleus	70.48	64.63
Solyc05g010570.2.1	Tomato	nucleus	50.48	62.35
Solyc05g018120.1.1	Tomato	nucleus	60.0	60.0
PGSC0003DMT400050569	Potato	nucleus	60.0	60.0
GSMUA_Achr9P06160_001	Banana	nucleus	56.19	59.3
CDY31444	Canola	nucleus	44.76	58.75
KRH64870	Soybean	nucleus	55.71	57.92
EES01269	Sorghum	nucleus	54.76	55.02
Os01t0680400-01	Rice	nucleus	53.81	53.55
TraesCS3A01G267300.1	Wheat	nucleus	54.29	52.78
HORVU3Hr1G062710.1	Barley	nucleus	53.81	52.31
TraesCS3D01G267500.1	Wheat	nucleus	53.81	52.31
AT1G20000.1	Thale cress	nucleus, plastid	46.67	48.04
Zm00001d011605_P001	Maize	nucleus	53.33	40.88

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	EntrezGene:827775	ProteinID:AEE84298.1	EMBL:AF238326	EMBL:AF370141
ArrayExpress:AT4G20280	EnsemblPlantsGene:AT4G20280	RefSeq:AT4G20280	TAIR:AT4G20280	RefSeq:AT4G20280-TAIR-G	EnsemblPlants:AT4G20280.1
TAIR:AT4G20280.1	EMBL:AY051084	EMBL:AY463612	Unigene:At.2189	ProteinID:CAA18253.1	ProteinID:CAB79028.1
GO:GO:0003674	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006367	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0046982	GO:GO:0051123	GO:GO:1903508	InterPro:Histone-fold
InterPro:IPR009072	RefSeq:NP_193761.1	PFAM:PF04719	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009049	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR13218	PANTHER:PTHR13218:SF14
UniProt:Q9M565	SUPFAM:SSF47113	Symbol:TAF11	InterPro:TAFII28	UniParc:UPI00000A6079	SEG:seg

Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]

Coordinates

chr4:+:10953540..10955076

Molecular Weight (calculated)

23701.3 Da

IEP (calculated)

5.134

GRAVY (calculated)

-0.872

Length

210 amino acids

Sequence
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.