Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0093g00470.t01 | Wine grape | nucleus | 48.04 | 49.49 |
| GSMUA_Achr9P06160_001 | Banana | nucleus | 46.08 | 47.24 |
| AT4G20280.1 | Thale cress | nucleus | 48.04 | 46.67 |
| KRH64870 | Soybean | nucleus | 45.59 | 46.04 |
| Solyc05g010570.2.1 | Tomato | nucleus | 37.75 | 45.29 |
| PGSC0003DMT400050569 | Potato | nucleus | 44.61 | 43.33 |
| Solyc05g018120.1.1 | Tomato | nucleus | 44.61 | 43.33 |
| EES01269 | Sorghum | nucleus | 43.63 | 42.58 |
| Os01t0680400-01 | Rice | nucleus | 43.63 | 42.18 |
| TraesCS3A01G267300.1 | Wheat | nucleus | 43.63 | 41.2 |
| HORVU3Hr1G062710.1 | Barley | nucleus | 43.14 | 40.74 |
| TraesCS3D01G267500.1 | Wheat | nucleus | 43.14 | 40.74 |
| Zm00001d011605_P001 | Maize | nucleus | 43.63 | 32.48 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.11 | EntrezGene:838589 | ProteinID:AAF79913.1 | ProteinID:AEE29921.1 | ArrayExpress:AT1G20000 |
| EnsemblPlantsGene:AT1G20000 | RefSeq:AT1G20000 | TAIR:AT1G20000 | RefSeq:AT1G20000-TAIR-G | EnsemblPlants:AT1G20000.1 | TAIR:AT1G20000.1 |
| Unigene:At.51686 | UniProt:F4HR03 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006367 | GO:GO:0008134 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046982 | GO:GO:0051123 |
| GO:GO:1903508 | InterPro:Histone-fold | InterPro:IPR009072 | RefSeq:NP_173429.1 | PFAM:PF04719 | PO:PO:0009005 |
| PO:PO:0009025 | PO:PO:0009049 | PANTHER:PTHR13218 | PANTHER:PTHR13218:SF14 | SUPFAM:SSF47113 | Symbol:TAF11b |
| InterPro:TAFII28 | UniParc:UPI0000162E27 | SEG:seg | : | : | : |
Description
TAF11BTranscription initiation factor TFIID subunit 11b [Source:UniProtKB/Swiss-Prot;Acc:F4HR03]
Coordinates
chr1:-:6936898..6937666
Molecular Weight (calculated)
23433.2 Da
IEP (calculated)
9.594
GRAVY (calculated)
-0.791
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFNARSCCF ASSNERVTCN CNCLKDQPVP RMKHSKDPFE AAMEEQEESP VETEQTLEGD ERAVKKCKTS VVAEAKNKDE VEFTKNITGA DPVTRANKMQ
101: KILSQFTEEQ MSRYESFRRS GFKKSDMEKL VQRITGGPKM DDTMNIVVRG IAKMFVGDLV ETARVVMRER KESGPIRPCH IRESYRRLKL QGKVPQRSVQ
201: RLFR
101: KILSQFTEEQ MSRYESFRRS GFKKSDMEKL VQRITGGPKM DDTMNIVVRG IAKMFVGDLV ETARVVMRER KESGPIRPCH IRESYRRLKL QGKVPQRSVQ
201: RLFR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.