Factsheet for Bra034092.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra013452.1-P
Bra020485.1-P
Bra025975.1-P
Bra030061.1-P
Bra030508.1-P
Bra030901.1-P
Bra030989.1-P
Bra033338.1-P
Bra035499.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	Bra030508.1-P	AT1G02680.1	17340043
AT3G10070.1	Bra033338.1-P	AT1G02680.1	17340043
AT3G10070.1	Bra025975.1-P	AT1G17440.1	17340043
AT3G10070.1	Bra030989.1-P	AT1G17440.1	17340043
AT3G10070.1	Bra030061.1-P	AT1G27720.1	17340043
AT3G10070.1	Bra035499.1-P	AT1G32750.1	17340043
AT3G10070.1	Bra030901.1-P	AT1G54140.1	17340043
AT3G10070.1	Bra013452.1-P	AT4G20280.1	17340043
AT3G10070.1	Bra011521.1-P	AT4G34340.1	17340043
AT3G10070.1	Bra020485.1-P	AT5G25150.1	17340043
AT3G10070.1	Bra036534.1-P	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41320	Canola	plastid	51.3	40.0
CDY22214	Canola	plastid	47.58	37.54
VIT_08s0007g03700.t01	Wine grape	nucleus	44.24	31.99
Bra029816.1-P	Field mustard	nucleus, plastid	61.71	31.5
AT3G10070.1	Thale cress	nucleus, plastid	60.97	30.43
Os01t0858500-01	Rice	plastid	30.86	27.57
GSMUA_Achr10P...	Banana	plastid	31.6	23.88
KRH30849	Soybean	nucleus, plastid	38.66	20.51
PGSC0003DMT400023148	Potato	nucleus, plastid	39.78	19.07
KRH32724	Soybean	nucleus, plastid	35.69	18.93
Solyc09g009680.2.1	Tomato	nucleus, plastid	39.41	18.73
Zm00001d042792_P002	Maize	nucleus, plastid	29.37	16.06
EES03919	Sorghum	nucleus, plastid	28.25	15.26
HORVU3Hr1G084430.4	Barley	plastid	30.11	14.86
TraesCS3B01G403500.1	Wheat	nucleus	30.11	14.81
TraesCS3D01G364400.1	Wheat	cytosol, plastid	29.74	14.63
TraesCS3A01G371300.1	Wheat	nucleus, plastid	29.0	14.08
Bra025975.1-P	Field mustard	plastid	22.68	9.43
Bra030989.1-P	Field mustard	plastid	21.19	9.36

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EnsemblPlantsGene:Bra034092	EnsemblPlants:Bra034092.1	EnsemblPlants:Bra034092.1-P
GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4EZ49	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264
SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI00025441B3	SEG:seg	:

Description

AT3G10070 (E=1e-029) TAF12, TAFII58 | TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor

Coordinates

chrA01:+:27502326..27504536

Molecular Weight (calculated)

29659.8 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.762

Length

269 amino acids

Sequence
(BLAST)

001: MDQPRQISPA SQPPETPSKP STQQSLHATN QPWLSSSTQG KPPLAPPSYR PLVNNPSMHH RSHVPHQHLS TSPSTSQPQE QLQQLISPQQ PFTSPTSTDP
101: CPRFRKSESY PLAMPAQPPM PQPGNQAKTV SSVNEESDDR ILGKRSIDEL FQQIDPSEKL DPEVEATLAD IAEDFVEAVI TMFNLGLVSL FLKCTKNWNI
201: RPPGFSSDEI KTFRKPLTTD IHKERLAATK TSVTVTEAAN ARNPFRHGTA NARGGQAKTP AKSLGLYNF

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.