CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX78982
CDX81826
CDX84083
CDX87098
CDX89953
CDY02479
CDY03944
CDY05378
CDY05473
CDY15256
CDY15437
CDY19814
CDY21749
CDY26139
CDY26245
CDY31444
CDY44660
CDY48302
CDY56625
CDY60273
CDY67613
CDY69783
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	CDX89953	AT1G02680.1	17340043
AT3G10070.1	CDY15256	AT1G02680.1	17340043
AT3G10070.1	CDY15437	AT1G02680.1	17340043
AT3G10070.1	CDY71056	AT1G02680.1	17340043
AT3G10070.1	CDX81826	AT1G17440.1	17340043
AT3G10070.1	CDY21749	AT1G17440.1	17340043
AT3G10070.1	CDY26245	AT1G17440.1	17340043
AT3G10070.1	CDY48302	AT1G17440.1	17340043
AT3G10070.1	CDY03944	AT1G27720.1	17340043
AT3G10070.1	CDY60273	AT1G27720.1	17340043
AT3G10070.1	CDX84083	AT1G32750.1	17340043
AT3G10070.1	CDY44660	AT1G32750.1	17340043
AT3G10070.1	CDY02479	AT1G54140.1	17340043
AT3G10070.1	CDY26139	AT1G54140.1	17340043
AT3G10070.1	CDY56625	AT1G54140.1	17340043
AT3G10070.1	CDX78982	AT4G20280.1	17340043
AT3G10070.1	CDY31444	AT4G20280.1	17340043
AT3G10070.1	CDY67613	AT4G20280.1	17340043
AT3G10070.1	CDX75423	AT4G34340.1	17340043
AT3G10070.1	CDY69783	AT4G34340.1	17340043
AT3G10070.1	CDX87098	AT5G25150.1	17340043
AT3G10070.1	CDY05378	AT5G25150.1	17340043
AT3G10070.1	CDY05473	AT5G25150.1	17340043
AT3G10070.1	CDY19814	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034092.1-P	Field mustard	plastid	37.54	47.58
CDY41320	Canola	plastid	39.3	38.84
VIT_08s0007g03700.t01	Wine grape	nucleus	32.55	29.84
CDY00904	Canola	nucleus, plastid	45.45	29.41
AT3G10070.1	Thale cress	nucleus, plastid	43.99	27.83
CDY60164	Canola	nucleus, plastid	42.23	27.32
Os01t0858500-01	Rice	plastid	22.87	25.91
GSMUA_Achr10P...	Banana	plastid	22.29	21.35
KRH32724	Soybean	nucleus, plastid	28.45	19.13
KRH30849	Soybean	nucleus, plastid	28.45	19.13
PGSC0003DMT400023148	Potato	nucleus, plastid	30.79	18.72
Solyc09g009680.2.1	Tomato	nucleus, plastid	30.5	18.37
HORVU3Hr1G084430.4	Barley	plastid	28.74	17.98
TraesCS3D01G364400.1	Wheat	cytosol, plastid	28.74	17.92
EES03919	Sorghum	nucleus, plastid	25.81	17.67
TraesCS3B01G403500.1	Wheat	nucleus	28.15	17.55
TraesCS3A01G371300.1	Wheat	nucleus, plastid	28.45	17.51
Zm00001d042792_P002	Maize	nucleus, plastid	24.63	17.07
CDY21749	Canola	plastid	19.06	11.61
CDX81826	Canola	plastid	17.01	10.78
CDY26245	Canola	plastid	19.65	10.29
CDY48302	Canola	plastid	17.3	9.97

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:A0A078GA06	UniProt:A0A078GA06	EnsemblPlants:CDY22214
ProteinID:CDY22214	ProteinID:CDY22214.1	GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046695	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00018637001	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998
PFAM:PF03847	PANTHER:PTHR12264	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0004EF005E
SEG:seg	:	:	:	:	:

Description

BnaC01g38870DBnaC01g38870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GA06]

Coordinates

chrLK032128:-:580484..582937

Molecular Weight (calculated)

37372.3 Da

IEP (calculated)

10.786

GRAVY (calculated)

-0.501

Length

341 amino acids

Sequence
(BLAST)

001: MRFSIIPYRY FRFDRFCINS ISVPSTFSHR KHRYNRRRRL RNPRFYHRFS NGLPLILYSF FSNPAIAVIS LDTTAATYPP LFGATSSTVV LETMSTTFLI
101: PPSAPASSSS SSLPISGQQR GGMAIGVPAS PIPSLSQPPP SAFPGSSGQQ YGGSGRRTVG MPEAASNTSL PQQQHQPKEQ LQQLRSPQQP LPHPHQPARV
201: QGPTQPHVPQ PGNQAKTVSS ENEVSDNRIL GKRSIHELLQ QIDPSEKLDP EVAAILADIA EDFVESVTTT FNLGLTFSSD EIKTFRKPLT TDIHKERLAA
301: IKKSVTVTEA ANARNPYRHG TANARGGQAK TPAKSLGLHN F

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.