CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX78982
CDX81826
CDX84083
CDX87098
CDX89953
CDY00904
CDY03594
CDY03944
CDY05378
CDY05473
CDY15256
CDY15437
CDY19814
CDY21749
CDY22214
CDY22787
CDY26245
CDY31444
CDY38963
CDY39435
CDY41320
CDY42510
CDY44660
CDY48302
CDY60164
CDY60273
CDY67548
CDY67613
CDY69783
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	CDX89953	AT1G02680.1	17340043
AT1G17440.1	CDY15256	AT1G02680.1	17340043
AT1G17440.1	CDY15437	AT1G02680.1	17340043
AT1G17440.1	CDY71056	AT1G02680.1	17340043
AT1G17440.1	CDX81826	AT1G17440.1	17340043
AT1G17440.1	CDY21749	AT1G17440.1	17340043
AT1G17440.1	CDY26245	AT1G17440.1	17340043
AT1G17440.1	CDY48302	AT1G17440.1	17340043
AT1G17440.1	CDY03944	AT1G27720.1	17340043
AT1G17440.1	CDY60273	AT1G27720.1	17340043
AT1G17440.1	CDX84083	AT1G32750.1	17340043
AT1G17440.1	CDY44660	AT1G32750.1	17340043
AT1G17440.1	CDY03594	AT1G50300.1	17340043
AT1G17440.1	CDY22787	AT1G50300.1	17340043
AT1G17440.1	CDY42510	AT1G50300.1	17340043
AT1G17440.1	CDY67548	AT1G50300.1	17340043
AT1G17440.1	CDY00904	AT3G10070.1	17340043
AT1G17440.1	CDY22214	AT3G10070.1	17340043
AT1G17440.1	CDY41320	AT3G10070.1	17340043
AT1G17440.1	CDY60164	AT3G10070.1	17340043
AT1G17440.1	CDX78982	AT4G20280.1	17340043
AT1G17440.1	CDY31444	AT4G20280.1	17340043
AT1G17440.1	CDY67613	AT4G20280.1	17340043
AT1G17440.1	CDX75423	AT4G34340.1	17340043
AT1G17440.1	CDY69783	AT4G34340.1	17340043
AT1G17440.1	CDX87098	AT5G25150.1	17340043
AT1G17440.1	CDY05378	AT5G25150.1	17340043
AT1G17440.1	CDY05473	AT5G25150.1	17340043
AT1G17440.1	CDY19814	AT5G25150.1	17340043
AT1G17440.1	CDY38963	AT5G45600.1	17340043
AT1G17440.1	CDY39435	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26245	Canola	plastid	75.0	68.2
AT1G17440.1	Thale cress	plastid	66.39	57.54
PGSC0003DMT400012398	Potato	nucleus	15.54	48.42
Solyc06g062900.2.1	Tomato	nucleus	18.75	46.25
CDX81826	Canola	plastid	41.89	46.1
CDY21749	Canola	plastid	42.23	44.64
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	44.26	44.63
Solyc03g122020.2.1	Tomato	nucleus, plastid	46.62	42.99
KRH47589	Soybean	nucleus, plastid	42.23	41.74
KRH06174	Soybean	nucleus, plastid	23.99	40.69
PGSC0003DMT400006601	Potato	nucleus, plastid	43.58	40.38
Zm00001d042879_P002	Maize	plastid	29.05	36.29
GSMUA_Achr7P10670_001	Banana	plastid	38.34	35.3
TraesCS3D01G356600.1	Wheat	nucleus, plastid	31.76	34.69
TraesCS3A01G362900.1	Wheat	nucleus, plastid	31.76	34.5
TraesCS3B01G395300.2	Wheat	nucleus, plastid	31.08	34.14
Os01t0846900-01	Rice	nucleus	30.74	33.58
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	31.93	33.1
Zm00001d012396_P003	Maize	nucleus, plastid	30.57	32.85
KXG33694	Sorghum	nucleus, plastid	30.57	32.67
TraesCS6D01G151600.1	Wheat	nucleus, plastid	22.13	31.34
HORVU6Hr1G032840.2	Barley	nucleus, plastid	20.95	29.59
TraesCS6B01G190100.1	Wheat	nucleus, plastid	16.72	23.68
CDY60164	Canola	nucleus, plastid	20.61	23.15
CDY00904	Canola	nucleus, plastid	20.61	23.15
TraesCS6A01G161300.1	Wheat	nucleus, plastid	16.22	22.86
CDY22214	Canola	plastid	9.97	17.3
CDY41320	Canola	plastid	9.46	16.23

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:A0A078IE35	UniProt:A0A078IE35	EnsemblPlants:CDY48302
ProteinID:CDY48302	ProteinID:CDY48302.1	GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046695	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00089264001	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998
PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom
UniParc:UPI0004EDBBC1	SEG:seg	:	:	:	:

Description

BnaC05g13560DBnaC05g13560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE35]

Coordinates

chrLK032765:-:34852..37505

Molecular Weight (calculated)

64605.0 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.829

Length

592 amino acids

Sequence
(BLAST)

001: MAEAIPSSSL SPKSLQSPNP MEPSPASSAP PPSSSQQQQQ QHMTPPISNS AASPAMAAVT NTEGAIQNSN SNPQPNPAAG AQIPSPSPLD QQAQTQQQLG
101: GQTQQIMQQI SSSSIPQLSQ QQQQQILQQH MSPQQQIPMS NYHIAQSLQR SPSVSRLNQI QQQQQQQQQQ QQGQYGSVLR QQAGMYGTMN FGGSGSVQQQ
201: NQQMGNPNLS RAGLVGQSGH LPMLNGAAAQ MNIQSQLLAA SPRQKAGMVQ GTQFHPGSSG QQLQGIQGMG MMNSLNLSSQ MRGNPALYAQ QQRINPAQMR
301: QQLSQQNALT SPQVQNLQRT PSSLAFMNSQ LPGLAQNGQA GMMAQQQWLK QMSGITSPNS QSFRLQQSQR QQALLLQQQM PSAQLHPNSM SLNQQQISQM
401: LQQQQQQQSQ MGQAQMNQSH QQQQQLQQMQ QTQQQQQMQQ QMPINQQQPS PRMTSHAGQK SVSLTGSQPD ATQSGTTTPG GSSSQGTEAT NQLLGKRKIQ
501: DLVSQVDAHA KLDPDVEDLL LEVADDFIDS VTSFACSLAK HRKSSILEPK DILLHLEKNL HLTVPGFSSE DKHQTKTYQL ISTRSDLQWC VP

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.