Factsheet for GSMUA_Achr7P10670_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11610_001
GSMUA_Achr4P14200_001
GSMUA_Achr6P27180_001
GSMUA_Achr7P10670_001
GSMUA_Achr7P26980_001
GSMUA_Achr8P27030_001
GSMUA_Achr8P27040_001
GSMUA_Achr9P06160_001
GSMUA_Achr9P09310_001
GSMUA_Achr9P22400_001
GSMUA_Achr9P22410_001
GSMUA_Achr9P26740_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	GSMUA_AchrUn_...	AT1G02680.1	17340043
AT1G17440.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT1G17440.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT1G17440.1	GSMUA_Achr2P11610_001	AT1G32750.1	17340043
AT1G17440.1	GSMUA_Achr6P27180_001	AT1G50300.1	17340043
AT1G17440.1	GSMUA_Achr8P27030_001	AT1G50300.1	17340043
AT1G17440.1	GSMUA_Achr8P27040_001	AT1G50300.1	17340043
AT1G17440.1	GSMUA_Achr10P...	AT3G10070.1	17340043
AT1G17440.1	GSMUA_Achr9P06160_001	AT4G20280.1	17340043
AT1G17440.1	GSMUA_Achr11P...	AT4G34340.1	17340043
AT1G17440.1	GSMUA_Achr9P09310_001	AT4G34340.1	17340043
AT1G17440.1	GSMUA_Achr9P26740_001	AT4G34340.1	17340043
AT1G17440.1	GSMUA_Achr7P26980_001	AT5G25150.1	17340043
AT1G17440.1	GSMUA_Achr9P22400_001	AT5G25150.1	17340043
AT1G17440.1	GSMUA_Achr9P22410_001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012398	Potato	nucleus	15.71	53.16
Solyc06g062900.2.1	Tomato	nucleus	18.04	48.33
KRH06174	Soybean	nucleus, plastid	24.88	45.85
Zm00001d042879_P002	Maize	plastid	32.19	43.67
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	38.1	41.74
KRH47589	Soybean	nucleus, plastid	37.48	40.23
TraesCS3D01G356600.1	Wheat	nucleus, plastid	33.9	40.22
Bra025975.1-P	Field mustard	plastid	40.44	40.19
CDY26245	Canola	plastid	40.59	40.09
Os01t0846900-01	Rice	nucleus	33.59	39.85
TraesCS3A01G362900.1	Wheat	nucleus, plastid	33.75	39.82
TraesCS3B01G395300.2	Wheat	nucleus, plastid	33.28	39.7
PGSC0003DMT400006601	Potato	nucleus, plastid	39.35	39.59
Solyc03g122020.2.1	Tomato	nucleus, plastid	39.19	39.25
Zm00001d012396_P003	Maize	nucleus, plastid	33.59	39.2
KXG33694	Sorghum	nucleus, plastid	33.59	38.99
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	34.53	38.88
CDY48302	Canola	plastid	35.3	38.34
CDX81826	Canola	plastid	32.04	38.29
AT1G17440.1	Thale cress	plastid	40.44	38.07
CDY21749	Canola	plastid	32.5	37.32
Bra030989.1-P	Field mustard	plastid	35.15	37.11
TraesCS6D01G151600.1	Wheat	nucleus, plastid	21.46	33.01
GSMUA_Achr10P...	Banana	plastid	17.88	32.3
HORVU6Hr1G032840.2	Barley	nucleus, plastid	20.68	31.74
TraesCS6B01G190100.1	Wheat	nucleus, plastid	16.49	25.36
TraesCS6A01G161300.1	Wheat	nucleus, plastid	16.49	25.24

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:GO:0000124	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009736	GO:GO:0009867	GO:GO:0009987
GO:GO:0010104	GO:GO:0046695	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr7G10670_001	EnsemblPlants:GSMUA_Achr7P10670_001	EnsemblPlants:GSMUA_Achr7T10670_001
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M0TGF5	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264
PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI000294ADA6	SEG:seg

Description

Putative Transcription initiation factor TFIID subunit A containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G10670_001]

Coordinates

chr7:-:8551543..8562577

Molecular Weight (calculated)

70132.9 Da

IEP (calculated)

10.368

GRAVY (calculated)

-0.719

Length

643 amino acids

Sequence
(BLAST)

001: MLSRPRRENP SHPFPGRFAP KSLVSLLGLA SSSPFDSSPS IRRRRGLLIP YRGETERERE REVAMAENPA SASPNKPLTQ PAPGVSDASI TPSNPQNPNL
101: PSPQIPPSPS MAASDLAQIS SPQLSQPQSQ ALNAAAALDY STKQQSIQSQ QQQQQQQQQL QSQQQMQNQQ QNLIAMRQHA GIYGGQMNFG GAQIQQQQHL
201: AAAAAAAGMA RSGMITQAGQ ISMLPGQTAQ HFNLQSQMLA QPRQKSLVQG GQFHSANSSG QAVQGMQNMG MMSSLGFNPQ LRANGPLPYG QQRLVHGQMR
301: QQQLSQPTAL TSPQKLPGQS LPRTPSAAAL NPQVSGLTQN GQSALVQTNL SQQQQQWLKH LQPSLPSPGS PSFHLQQQQR QQQSFLTQQL ASSQLHQKSM
401: ALTQQQIAQL VQQPLPSQQQ QQHLIQQQQL QQIQQLQQQQ QLQSPRLPGS AIQKSLNLTG SQPETPASGT TMTGGSSSQG AEATNQLLGK RKIHDLVLQV
501: DPMGKLDPEV EDLLLEIADD FIDSVTSFAC SLAKHRKSST LEAKDVLLHL EKNWNLAVPG YTREEKSYQK ESLPLDIHKQ RLEMIRELAE THQSDGDISG
601: AKVTNKQAIN NSGSDHSIKP SPSSEQLSLP AVGSQLMHKS QRF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.