Factsheet for Zm00001d042792_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007933_P001
Zm00001d008371_P001
Zm00001d011605_P001
Zm00001d012396_P003
Zm00001d016330_P001
Zm00001d025112_P001
Zm00001d029473_P001
Zm00001d029598_P003
Zm00001d039729_P004
Zm00001d039731_P002
Zm00001d040757_P002
Zm00001d040759_P002
Zm00001d041530_P001
Zm00001d041766_P001
Zm00001d042879_P002
Zm00001d044810_P001
Zm00001d046579_P019
Zm00001d046810_P002
Zm00001d047265_P001
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	Zm00001d040757_P002	AT1G02680.1	17340043
AT3G10070.1	Zm00001d040759_P002	AT1G02680.1	17340043
AT3G10070.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT3G10070.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT3G10070.1	Zm00001d029598_P003	AT1G27720.1	17340043
AT3G10070.1	Zm00001d039729_P004	AT1G27720.1	17340043
AT3G10070.1	Zm00001d039731_P002	AT1G27720.1	17340043
AT3G10070.1	Zm00001d046579_P019	AT1G32750.1	17340043
AT3G10070.1	Zm00001d007933_P001	AT1G54140.1	17340043
AT3G10070.1	Zm00001d008371_P001	AT1G54140.1	17340043
AT3G10070.1	Zm00001d029473_P001	AT1G54140.1	17340043
AT3G10070.1	Zm00001d047265_P001	AT1G54140.1	17340043
AT3G10070.1	Zm00001d011605_P001	AT4G20280.1	17340043
AT3G10070.1	Zm00001d041530_P001	AT4G34340.1	17340043
AT3G10070.1	Zm00001d041766_P001	AT4G34340.1	17340043
AT3G10070.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT3G10070.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT3G10070.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT3G10070.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT3G10070.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03919	Sorghum	nucleus, plastid	71.14	70.28
Os01t0858500-01	Rice	plastid	33.94	55.48
TraesCS3D01G364400.1	Wheat	cytosol, plastid	52.85	47.53
HORVU3Hr1G084430.4	Barley	plastid	50.61	45.69
TraesCS3B01G403500.1	Wheat	nucleus	50.61	45.52
TraesCS3A01G371300.1	Wheat	nucleus, plastid	50.2	44.58
GSMUA_Achr10P...	Banana	plastid	26.22	36.24
VIT_08s0007g03700.t01	Wine grape	nucleus	26.63	35.22
KRH30849	Soybean	nucleus, plastid	32.72	31.76
AT3G10070.1	Thale cress	nucleus, plastid	34.35	31.35
CDY00904	Canola	nucleus, plastid	33.33	31.12
CDY60164	Canola	nucleus, plastid	33.33	31.12
Bra029816.1-P	Field mustard	nucleus, plastid	33.13	30.93
KRH32724	Soybean	nucleus, plastid	30.28	29.39
Bra034092.1-P	Field mustard	plastid	16.06	29.37
PGSC0003DMT400023148	Potato	nucleus, plastid	30.89	27.09
Solyc09g009680.2.1	Tomato	nucleus, plastid	30.69	26.68
CDY41320	Canola	plastid	18.29	26.09
CDY22214	Canola	plastid	17.07	24.63
Zm00001d042879_P002	Maize	plastid	21.75	22.57
Zm00001d012396_P003	Maize	nucleus, plastid	25.0	22.32

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:103650984	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	UniProt:A0A1D6N6Q8	GO:GO:0000124
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0046695	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONM36285.1	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264
PANTHER:PTHR12264:SF21	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0004DEB3E4	EnsemblPlantsGene:Zm00001d042792
EnsemblPlants:Zm00001d042792_P002	EnsemblPlants:Zm00001d042792_T002	SEG:seg	:	:	:

Description

Transcription initiation factor TFIID subunit 12

Coordinates

chr3:+:179771388..179776757

Molecular Weight (calculated)

51249.0 Da

IEP (calculated)

10.325

GRAVY (calculated)

-0.574

Length

492 amino acids

Sequence
(BLAST)

001: MDAPPPSQPD DAAPAPSSTL ASAPSPAPTS NPPTSAAAAA PAPDSAIANP NPNLGTVANP AQTLEAPGPS SAAARPPPPR MRTPYTHLAA PITMSSSSSA
101: ATAAASSASV PAASSSAPPI PRGGVVLGVP APRSAQTPAG YTGFVPPPPL AHQFGSMHRG PDQPPPSSSQ FRQPSPGTQN IGIVGSLNTS QISPGTISGP
201: QKPRPGLPSS TPIPSGSQMP GSQRPPSQSL MRPVTVSSPS LASQQTPQSS SSTFRPQQRP QVSQPRPQQS QLVTPPQQNT ILTQQQQQQK QQQSASHQNQ
301: QIAAPKNQPQ LSQHPTARTP ISMTPKPDLP AIQNVAVLQS VDTAATDANA SETGTRLLTK RSIHELVAQI DPNEKLDPEV EDVLIDIAED FVESVTTFAC
401: SLAKHRKSST LEAKDVLLHA VLSITERSWN ITLPGFSGDE IKLYKKQHIN DIHRERLALI KKSMATDTRN SAAQAAANQK NQTPKPPAPA SP

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.