Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G371300.1 | Wheat | nucleus, plastid | 90.68 | 89.53 |
| HORVU3Hr1G084430.4 | Barley | plastid | 87.2 | 87.52 |
| TraesCS3D01G364400.1 | Wheat | cytosol, plastid | 84.28 | 84.28 |
| Os01t0858500-01 | Rice | plastid | 33.27 | 60.47 |
| EES03919 | Sorghum | nucleus, plastid | 54.66 | 60.04 |
| Zm00001d042792_P002 | Maize | nucleus, plastid | 45.52 | 50.61 |
| VIT_08s0007g03700.t01 | Wine grape | nucleus | 28.34 | 41.67 |
| GSMUA_Achr10P... | Banana | plastid | 24.31 | 37.36 |
| KRH30849 | Soybean | nucleus, plastid | 32.18 | 34.71 |
| KRH32724 | Soybean | nucleus, plastid | 31.81 | 34.32 |
| CDY60164 | Canola | nucleus, plastid | 31.99 | 33.21 |
| Bra029816.1-P | Field mustard | nucleus, plastid | 31.99 | 33.21 |
| CDY00904 | Canola | nucleus, plastid | 31.63 | 32.83 |
| AT3G10070.1 | Thale cress | nucleus, plastid | 32.18 | 32.65 |
| PGSC0003DMT400023148 | Potato | nucleus, plastid | 31.63 | 30.84 |
| Solyc09g009680.2.1 | Tomato | nucleus, plastid | 31.81 | 30.74 |
| Bra034092.1-P | Field mustard | plastid | 14.81 | 30.11 |
| CDY22214 | Canola | plastid | 17.55 | 28.15 |
| CDY41320 | Canola | plastid | 17.37 | 27.54 |
| TraesCS3B01G395300.2 | Wheat | nucleus, plastid | 23.58 | 23.93 |
| TraesCS6B01G190100.1 | Wheat | nucleus, plastid | 15.17 | 19.86 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.5 | MapMan:15.3.5.3.12 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PD012998 | PFAM:PF03847 |
| SUPFAM:SSF47113 | InterPro:TFIID_TAF12_dom | EnsemblPlantsGene:TraesCS3B01G403500 | EnsemblPlants:TraesCS3B01G403500.1 | TIGR:cd07981 | SEG:seg |
Description
No Description!
Coordinates
chr3B:-:637616189..637620426
Molecular Weight (calculated)
57999.1 Da
IEP (calculated)
10.392
GRAVY (calculated)
-0.784
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPPPTQPD AAAPPPSTAA AAPPAAPPPN PAPPISTAAP PTSESTPAPA PAPAPAPAPA PAPAPAQTLE PPTPIPATAR PPAPRMRPPY THLASPITMS
101: SSSSAATAGA SSAASAMARG GVAIGLPAHP RGTQTPMGYT GFVPPPPLAH QFSPMHRGPD QAPLPTPQLR QPAPGIQNIG MIGSLNASQM RPGAISGSQQ
201: PRPGLPSSAT PSSSGSQMPG SQKTPMHSLS RPMSMGSPAA SLQQTPANMS SPFRPQQRPQ VPQQRPQVPQ PRPYHAAQSA PVASQQNALS GQQQQPQHHQ
301: QQQQQQVLQQ QQQQVLQQQQ QQVLQQQQQQ QQQQQVLQQQ QQQQQQQQQQ QQSQPQSSSQ QNQQNTTLKN QQQAARTPVS LTQKPDSPAT LQATNMQLVD
401: MASADAASGE SSNRLLSKRS IHDLLAQIDP SERLDPDVED VLIDIAEDFI ESVGTFACSL AKHRKSTTLE AKDVLLHAER SWNITLPGFT GDEIKLYKKP
501: HVNDIHRERL TLIKKSMASE GNIKTSAAQS TANQKNQAPK PPATGSL
101: SSSSAATAGA SSAASAMARG GVAIGLPAHP RGTQTPMGYT GFVPPPPLAH QFSPMHRGPD QAPLPTPQLR QPAPGIQNIG MIGSLNASQM RPGAISGSQQ
201: PRPGLPSSAT PSSSGSQMPG SQKTPMHSLS RPMSMGSPAA SLQQTPANMS SPFRPQQRPQ VPQQRPQVPQ PRPYHAAQSA PVASQQNALS GQQQQPQHHQ
301: QQQQQQVLQQ QQQQVLQQQQ QQVLQQQQQQ QQQQQVLQQQ QQQQQQQQQQ QQSQPQSSSQ QNQQNTTLKN QQQAARTPVS LTQKPDSPAT LQATNMQLVD
401: MASADAASGE SSNRLLSKRS IHDLLAQIDP SERLDPDVED VLIDIAEDFI ESVGTFACSL AKHRKSTTLE AKDVLLHAER SWNITLPGFT GDEIKLYKKP
501: HVNDIHRERL TLIKKSMASE GNIKTSAAQS TANQKNQAPK PPATGSL
001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH
Arabidopsis Description
TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.