Factsheet for TraesCS3B01G421600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G371300.1
TraesCS3B01G403500.1
TraesCS3D01G364400.1
TraesCS5B01G318400.1
TraesCS5D01G324200.2
TraesCS7A01G467500.1
TraesCS7B01G416400.1
TraesCS7D01G496500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	TraesCS3A01G371300.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3B01G403500.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3D01G364400.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS5B01G318400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS5D01G324200.2	AT5G25150.1	17340043
AT1G54140.1	TraesCS7A01G467500.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7B01G416400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7D01G496500.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G387000.1	Wheat	nucleus	80.91	97.8
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	97.73	95.13
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	95.0	95.0
TraesCS3B01G445300.1	Wheat	nucleus	77.27	94.44
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	93.18	93.61
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	76.82	93.37
TraesCS3D01G382200.1	Wheat	nucleus	85.91	92.65
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	66.82	91.3
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	86.82	85.27
EER94702	Sorghum	cytosol, nucleus, plastid	81.36	78.51
Zm00001d029473_P001	Maize	plastid	80.0	78.22
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	76.36	75.0
GSMUA_Achr7P11400_001	Banana	cytosol	52.27	72.33
Zm00001d047265_P001	Maize	plastid	78.64	69.2
Solyc04g010090.2.1	Tomato	nucleus	45.91	62.73
VIT_09s0002g01160.t01	Wine grape	cytosol	50.0	62.15
Bra030901.1-P	Field mustard	nucleus	50.0	61.45
CDY56625	Canola	nucleus	50.0	61.45
CDY02479	Canola	nucleus	50.0	61.45
PGSC0003DMT400029923	Potato	nucleus	50.0	60.11
CDY26139	Canola	cytosol, nucleus, plastid	42.27	59.62
AT1G54140.1	Thale cress	nucleus	49.55	59.56
KRH02410	Soybean	cytosol	46.36	57.63
KRH50675	Soybean	cytosol	45.45	57.47
KRH73515	Soybean	cytosol	43.18	52.78
CDY33086	Canola	plastid	26.82	50.86
GSMUA_Achr10P...	Banana	cytosol	46.82	25.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF02291	PFscan:PS51257	PANTHER:PTHR12595
PANTHER:PTHR12595:SF6	SUPFAM:SSF47113	InterPro:TFIID-31	EnsemblPlantsGene:TraesCS3B01G421600	EnsemblPlants:TraesCS3B01G421600.1	TIGR:cd07979
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:658494277..658498604

Molecular Weight (calculated)

23656.7 Da

IEP (calculated)

4.522

GRAVY (calculated)

-0.504

Length

220 amino acids

Sequence
(BLAST)

001: MDSGGVRPSL PSAAAAAGGA SCPDEPRDAR VVRELLRSMG LGEGEYEPRV VHQFLDLAYR YVGDVLGDAQ VYADHAAKPQ LDADDVRLAI QAKVNFSFCQ
101: PPPREVLLEL ARSRNKIPLP KSIAPPGSIP LPPEQDTLLS ENYQLLPALK PPAQTEEAED DNEGADAIPA NPSPNYSQDQ RGSEQHQSQS QSQRVSFQLN
201: AVAAAAAKRP LVTVDQLNMG

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.