Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G386900.1 | Wheat | nucleus | 74.73 | 94.44 |
| TraesCS3A01G386800.1 | Wheat | cytosol | 92.86 | 90.86 |
| TraesCS3A01G387200.1 | Wheat | nucleus | 57.69 | 88.98 |
| TraesCS3B01G421600.1 | Wheat | cytosol, nucleus, plastid | 97.8 | 80.91 |
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 95.05 | 78.64 |
| TraesCS3B01G421700.1 | Wheat | cytosol, nucleus, plastid | 96.7 | 77.88 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 84.62 | 75.49 |
| TraesCS3A01G472800.1 | Wheat | cytosol, nucleus, plastid | 89.56 | 72.44 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 62.64 | 71.7 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 80.22 | 64.04 |
| Zm00001d029473_P001 | Maize | plastid | 79.12 | 64.0 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 77.47 | 62.95 |
| Solyc04g010090.2.1 | Tomato | nucleus | 55.49 | 62.73 |
| Zm00001d047265_P001 | Maize | plastid | 79.67 | 58.0 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 55.49 | 57.06 |
| Bra030901.1-P | Field mustard | nucleus | 54.4 | 55.31 |
| CDY56625 | Canola | nucleus | 54.4 | 55.31 |
| CDY02479 | Canola | nucleus | 54.4 | 55.31 |
| PGSC0003DMT400029923 | Potato | nucleus | 54.95 | 54.64 |
| AT1G54140.1 | Thale cress | nucleus | 53.85 | 53.55 |
| KRH02410 | Soybean | cytosol | 51.65 | 53.11 |
| KRH50675 | Soybean | cytosol | 50.55 | 52.87 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 44.51 | 51.92 |
| CDY33086 | Canola | plastid | 32.97 | 51.72 |
| KRH73515 | Soybean | cytosol | 48.35 | 48.89 |
| GSMUA_Achr10P... | Banana | cytosol | 56.04 | 25.69 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF02291 | PANTHER:PTHR12595 | PANTHER:PTHR12595:SF6 |
| SUPFAM:SSF47113 | InterPro:TFIID-31 | EnsemblPlantsGene:TraesCS3A01G387000 | EnsemblPlants:TraesCS3A01G387000.1 | TIGR:cd07979 | SEG:seg |
Description
No Description!
Coordinates
chr3A:+:636397834..636400582
Molecular Weight (calculated)
19780.1 Da
IEP (calculated)
4.338
GRAVY (calculated)
-0.545
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSEGEYEP RVVHQFLDLA YGYVGDVLGD AQVYADHAAK PQLDADDVRL AIQAKVNFSF SQPPPREVLL ELARSRNKIP LPKSIAPPGS IPLPPEQDTL
101: LSENYQLLPA LKPPAQTEEA EDDNEGADAI PANPSPNYSQ DQRGSEQHQS QSQSQRVSFQ LNAVAAAAAK RPLVTIDQLN MG
101: LSENYQLLPA LKPPAQTEEA EDDNEGADAI PANPSPNYSQ DQRGSEQHQS QSQSQRVSFQ LNAVAAAAAK RPLVTIDQLN MG
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.