Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P11400_001 | Banana | cytosol | 27.96 | 69.81 |
| Solyc04g010090.2.1 | Tomato | nucleus | 24.18 | 59.63 |
| TraesCS3B01G445300.1 | Wheat | nucleus | 26.2 | 57.78 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 25.69 | 57.63 |
| TraesCS3A01G387000.1 | Wheat | nucleus | 25.69 | 56.04 |
| TraesCS3A01G386800.1 | Wheat | cytosol | 25.94 | 55.38 |
| TraesCS3B01G421800.1 | Wheat | cytosol, nucleus, plastid | 22.17 | 54.66 |
| Bra030901.1-P | Field mustard | nucleus | 24.18 | 53.63 |
| CDY02479 | Canola | nucleus | 24.18 | 53.63 |
| CDY56625 | Canola | nucleus | 23.93 | 53.07 |
| KRH50675 | Soybean | cytosol | 23.17 | 52.87 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 20.65 | 52.56 |
| KRH02410 | Soybean | cytosol | 23.43 | 52.54 |
| AT1G54140.1 | Thale cress | nucleus | 24.18 | 52.46 |
| TraesCS3A01G386900.1 | Wheat | nucleus | 18.89 | 52.08 |
| PGSC0003DMT400029923 | Potato | nucleus | 23.93 | 51.91 |
| KRH73515 | Soybean | cytosol | 22.67 | 50.0 |
| HORVU3Hr1G081440.3 | Barley | cytosol | 14.11 | 49.12 |
| TraesCS3D01G382100.1 | Wheat | cytosol, nucleus, plastid | 26.7 | 48.4 |
| TraesCS3B01G422000.1 | Wheat | cytosol, nucleus, plastid | 25.94 | 47.03 |
| TraesCS3D01G406000.1 | Wheat | cytosol, nucleus, plastid | 25.44 | 46.98 |
| TraesCS3B01G421600.1 | Wheat | cytosol, nucleus, plastid | 25.94 | 46.82 |
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 25.94 | 46.82 |
| Zm00001d029473_P001 | Maize | plastid | 26.45 | 46.67 |
| CDY33086 | Canola | plastid | 13.6 | 46.55 |
| HORVU3Hr1G100530.1 | Barley | cytosol | 24.43 | 46.19 |
| TraesCS3B01G421700.1 | Wheat | cytosol, nucleus, plastid | 26.2 | 46.02 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 26.2 | 45.61 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 23.43 | 45.59 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 25.69 | 45.54 |
| HORVU3Hr1G091670.2 | Barley | cytosol, mitochondrion, nucleus | 12.59 | 45.05 |
| TraesCS3A01G387200.1 | Wheat | nucleus | 13.35 | 44.92 |
| TraesCS3B01G516000.1 | Wheat | cytosol, nucleus, plastid | 25.19 | 44.64 |
| TraesCS3A01G472800.1 | Wheat | cytosol, nucleus, plastid | 25.19 | 44.44 |
| TraesCS3D01G468500.1 | Wheat | cytosol, nucleus, plastid | 24.94 | 44.2 |
| TraesCS3B01G421900.1 | Wheat | cytosol, nucleus, plastid | 18.89 | 41.44 |
| Zm00001d047265_P001 | Maize | plastid | 25.69 | 40.8 |
| Zm00001d007933_P001 | Maize | plastid | 15.62 | 36.69 |
| HORVU2Hr1G031760.1 | Barley | cytosol, nucleus | 8.31 | 34.38 |
| Zm00001d008371_P001 | Maize | cytosol | 16.62 | 26.4 |
| HORVU3Hr1G081540.4 | Barley | plastid | 14.36 | 23.46 |
| Os07t0612500-00 | Rice | nucleus | 14.61 | 13.65 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr10G25860_001 | EnsemblPlants:GSMUA_Achr10P25860_001 | EnsemblPlants:GSMUA_Achr10T25860_001 | InterPro:Histone-fold | InterPro:IPR009072 |
| UniProt:M0RLG0 | PFAM:PF02291 | PANTHER:PTHR12595 | PANTHER:PTHR12595:SF6 | SUPFAM:SSF47113 | InterPro:TFIID-31 |
| UniParc:UPI000296715B | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G25860_001]
Coordinates
chr10:-:29677082..29680975
Molecular Weight (calculated)
44067.7 Da
IEP (calculated)
8.917
GRAVY (calculated)
-0.610
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGDGDYEP RVVHQFLELA YRYVVDVLSD AQIYSDHASK TAIDPDDVRL AIQSKVNFSF SQPPPREVLL ELARSRNKTP LPKSIAPPGS IPLPPEQDTL
101: ISPNYQLLIP RKHPPQPRIG TDPIATTNLS QEPRIGTDQQ PQQQSPQRVA FPLSSTAERP RRDEREGSVW IPAEGKRIER KSEAPERREF IEHLTPVVSV
201: DADDIMLLRR WLGLRGKPKE EILVERREVR ATIHGHETDD GLIEPMVLRR PRRRRSSRGL RRRLIGVSRG RGLYLVEGKR RGVRVGGEMV GEVEAGGGAA
301: EEEGGSVEGP GRLLGGVVGA EPDPLPAPRQ PDLRNPFPPP PLPHPQVPAL LLRRLTATGL HARVLYSFAR EVEYLRDACG REATAWTSEA AEGGVEA
101: ISPNYQLLIP RKHPPQPRIG TDPIATTNLS QEPRIGTDQQ PQQQSPQRVA FPLSSTAERP RRDEREGSVW IPAEGKRIER KSEAPERREF IEHLTPVVSV
201: DADDIMLLRR WLGLRGKPKE EILVERREVR ATIHGHETDD GLIEPMVLRR PRRRRSSRGL RRRLIGVSRG RGLYLVEGKR RGVRVGGEMV GEVEAGGGAA
301: EEEGGSVEGP GRLLGGVVGA EPDPLPAPRQ PDLRNPFPPP PLPHPQVPAL LLRRLTATGL HARVLYSFAR EVEYLRDACG REATAWTSEA AEGGVEA
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.