Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0858500-01 | |
| Os07t0205200-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54140.1 | Os01t0858500-01 | AT3G10070.1 | 17340043 |
| AT1G54140.1 | Os07t0205200-02 | AT5G25150.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G421800.1 | Wheat | cytosol, nucleus, plastid | 59.38 | 82.61 |
| TraesCS3A01G387000.1 | Wheat | nucleus | 62.95 | 77.47 |
| TraesCS3B01G445300.1 | Wheat | nucleus | 62.05 | 77.22 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 78.57 | 77.19 |
| TraesCS3B01G421600.1 | Wheat | cytosol, nucleus, plastid | 75.0 | 76.36 |
| TraesCS3D01G382100.1 | Wheat | cytosol, nucleus, plastid | 74.11 | 75.8 |
| Zm00001d029473_P001 | Maize | plastid | 75.89 | 75.56 |
| TraesCS3B01G422000.1 | Wheat | cytosol, nucleus, plastid | 73.21 | 74.89 |
| TraesCS3D01G406000.1 | Wheat | cytosol, nucleus, plastid | 71.88 | 74.88 |
| TraesCS3B01G421700.1 | Wheat | cytosol, nucleus, plastid | 75.0 | 74.34 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 52.68 | 74.21 |
| TraesCS3D01G468500.1 | Wheat | cytosol, nucleus, plastid | 74.11 | 74.11 |
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 72.77 | 74.09 |
| TraesCS3B01G516000.1 | Wheat | cytosol, nucleus, plastid | 73.21 | 73.21 |
| TraesCS3A01G386800.1 | Wheat | cytosol | 60.71 | 73.12 |
| TraesCS3A01G472800.1 | Wheat | cytosol, nucleus, plastid | 73.21 | 72.89 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 66.07 | 72.55 |
| TraesCS3A01G386900.1 | Wheat | nucleus | 46.43 | 72.22 |
| HORVU3Hr1G100530.1 | Barley | cytosol | 67.41 | 71.9 |
| TraesCS3B01G421900.1 | Wheat | cytosol, nucleus, plastid | 58.04 | 71.82 |
| Zm00001d047265_P001 | Maize | plastid | 74.55 | 66.8 |
| TraesCS3A01G387200.1 | Wheat | nucleus | 33.48 | 63.56 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 43.3 | 62.18 |
| CDY02479 | Canola | nucleus | 49.55 | 62.01 |
| Bra030901.1-P | Field mustard | nucleus | 49.55 | 62.01 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 48.21 | 61.02 |
| KRH02410 | Soybean | cytosol | 47.77 | 60.45 |
| KRH50675 | Soybean | cytosol | 46.88 | 60.34 |
| CDY56625 | Canola | nucleus | 48.21 | 60.34 |
| Solyc04g010090.2.1 | Tomato | nucleus | 43.3 | 60.25 |
| PGSC0003DMT400029923 | Potato | nucleus | 48.66 | 59.56 |
| AT1G54140.1 | Thale cress | nucleus | 48.21 | 59.02 |
| KRH73515 | Soybean | cytosol | 44.2 | 55.0 |
| CDY33086 | Canola | plastid | 26.79 | 51.72 |
| HORVU3Hr1G081540.4 | Barley | plastid | 41.52 | 38.27 |
| GSMUA_Achr10P... | Banana | cytosol | 45.54 | 25.69 |
| Os07t0612500-00 | Rice | nucleus | 39.29 | 20.71 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | EntrezGene:4333084 | ProteinID:ABF96541.1 | ProteinID:BAS84647.1 |
| GO:GO:0000124 | GO:GO:0001075 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0003723 | GO:GO:0003743 | GO:GO:0003824 | GO:GO:0004402 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0006366 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006464 |
| GO:GO:0008134 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043966 | GO:GO:0044212 | GO:GO:0045944 |
| GO:GO:0046982 | GO:GO:0051123 | InterPro:Histone-fold | InterPro:IPR009072 | EnsemblPlantsGene:Os03g0408500 | EnsemblPlants:Os03t0408500-01 |
| PFAM:PF02291 | PANTHER:PTHR12595 | PANTHER:PTHR12595:SF6 | UniProt:Q10JT5 | SUPFAM:SSF47113 | InterPro:TFIID-31 |
| UniParc:UPI0000DB4687 | RefSeq:XP_015627953.1 | RefSeq:XP_015627954.1 | SEG:seg | : | : |
Description
Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed. (Os03t0408500-01)
Coordinates
chr3:+:16794238..16799483
Molecular Weight (calculated)
23910.0 Da
IEP (calculated)
4.882
GRAVY (calculated)
-0.560
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPGGLRPAP QSAAAAAAAA AAGAGAGASA ADEPRDARVV RELLRSMGLS EGEYEPRVVH QFLDLAYRYV GDVLGDAQVY ADHAGKPQLD ADDVRLAIQS
101: KVNFSFSQPP PREVLLEVAR NRNKIPLPKS IAPPGSIPLP PEQDTLLSQN YQLLAPLKPP PQFEETEDDN AGANPTPTSN PSNPSPNNLQ EQQQLPQHGQ
201: RVSFQLNAVA AAKRRGTMDQ LNMG
101: KVNFSFSQPP PREVLLEVAR NRNKIPLPKS IAPPGSIPLP PEQDTLLSQN YQLLAPLKPP PQFEETEDDN AGANPTPTSN PSNPSPNNLQ EQQQLPQHGQ
201: RVSFQLNAVA AAKRRGTMDQ LNMG
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.