Factsheet for Bra033338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra013452.1-P
Bra025069.1-P
Bra025975.1-P
Bra029816.1-P
Bra030989.1-P
Bra034092.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	Bra025975.1-P	AT1G17440.1	17340043
AT1G02680.1	Bra030989.1-P	AT1G17440.1	17340043
AT1G02680.1	Bra029816.1-P	AT3G10070.1	17340043
AT1G02680.1	Bra034092.1-P	AT3G10070.1	17340043
AT1G02680.1	Bra013452.1-P	AT4G20280.1	17340043
AT1G02680.1	Bra011521.1-P	AT4G34340.1	17340043
AT1G02680.1	Bra025069.1-P	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030508.1-P	Field mustard	plastid	94.53	94.53
AT1G02680.1	Thale cress	plastid	87.5	88.89
CDX89953	Canola	nucleus, plastid	99.22	75.6
Zm00001d040759_P002	Maize	cytosol	12.5	66.67
PGSC0003DMT400076353	Potato	nucleus	64.84	64.84
Solyc02g078300.2.1	Tomato	nucleus	64.84	64.84
KRH31641	Soybean	nucleus, plastid	50.78	61.9
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	60.94	60.47
KRH31624	Soybean	nucleus, plastid	63.28	59.56
KRH31820	Soybean	nucleus, plastid	62.5	58.82
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	65.62	57.53
Os01t0338100-00	Rice	plastid	59.38	46.63
Zm00001d040757_P002	Maize	plastid	61.72	42.7
EES00711	Sorghum	plastid	61.72	42.25
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	41.41	41.09
TraesCS5D01G143700.1	Wheat	plastid	57.81	36.82
TraesCS1D01G111100.1	Wheat	plastid	59.38	36.72
TraesCS5A01G149100.1	Wheat	plastid	59.38	36.72
HORVU1Hr1G024140.1	Barley	plastid	59.38	36.36
TraesCS1A01G107900.2	Wheat	nucleus, plastid	60.16	34.38
TraesCS1B01G130100.1	Wheat	plastid	58.59	32.19

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	EnsemblPlantsGene:Bra033338	EnsemblPlants:Bra033338.1	EnsemblPlants:Bra033338.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4EX03	PFAM:PF02269	PANTHER:PTHR11380	PANTHER:PTHR11380:SF5	SUPFAM:SSF47113
InterPro:TFIID_TAF13	UniParc:UPI0002544DA9	SEG:seg	:	:	:

Description

AT1G02680 (E=8e-052) TAF13 | TAF13 (TBP-ASSOCIATED FACTOR 13); DNA binding / RNA polymerase II transcription factor

Coordinates

chrA10:-:4154283..4155131

Molecular Weight (calculated)

14479.4 Da

IEP (calculated)

5.811

GRAVY (calculated)

-0.591

Length

128 amino acids

Sequence
(BLAST)

001: MSNTPGAAAP SSSKSKATGN SQAPEKRKLL FQKELQHMMY GFGDEQNPLP ETVALVEDIV VEYVTDLTHK AQEIGTKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EEKITSLD

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.