Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030508.1-P | Field mustard | plastid | 89.68 | 88.28 |
| CDY15437 | Canola | plastid | 89.68 | 88.28 |
| Bra033338.1-P | Field mustard | nucleus, plastid | 88.89 | 87.5 |
| CDY15256 | Canola | nucleus, plastid | 86.51 | 84.5 |
| CDY71056 | Canola | mitochondrion, plastid | 89.68 | 67.26 |
| Zm00001d040759_P002 | Maize | cytosol | 12.7 | 66.67 |
| CDX89953 | Canola | nucleus, plastid | 88.89 | 66.67 |
| KRH31641 | Soybean | nucleus, plastid | 54.76 | 65.71 |
| Solyc02g078300.2.1 | Tomato | nucleus | 63.49 | 62.5 |
| PGSC0003DMT400076353 | Potato | nucleus | 63.49 | 62.5 |
| KRH31624 | Soybean | nucleus, plastid | 66.67 | 61.76 |
| KRH31820 | Soybean | nucleus, plastid | 65.87 | 61.03 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 61.11 | 59.69 |
| VIT_07s0005g01230.t01 | Wine grape | nucleus, plastid | 66.67 | 57.53 |
| Os01t0338100-00 | Rice | plastid | 60.32 | 46.63 |
| Zm00001d040757_P002 | Maize | plastid | 62.7 | 42.7 |
| EES00711 | Sorghum | plastid | 62.7 | 42.25 |
| Solyc06g036200.1.1 | Tomato | endoplasmic reticulum | 41.27 | 40.31 |
| TraesCS5D01G143700.1 | Wheat | plastid | 60.32 | 37.81 |
| TraesCS1D01G111100.1 | Wheat | plastid | 61.9 | 37.68 |
| TraesCS5A01G149100.1 | Wheat | plastid | 61.9 | 37.68 |
| HORVU1Hr1G024140.1 | Barley | plastid | 61.9 | 37.32 |
| TraesCS1A01G107900.2 | Wheat | nucleus, plastid | 62.7 | 35.27 |
| TraesCS1B01G130100.1 | Wheat | plastid | 61.11 | 33.05 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.4.5 | MapMan:15.3.5.3.13 | EntrezGene:837962 | UniProt:A0A178WN38 | EMBL:AB493426 |
| EMBL:AC022521 | ProteinID:AEE27457.1 | EMBL:AK175906 | EMBL:AK175966 | EMBL:AK176854 | EMBL:AK221393 |
| ArrayExpress:AT1G02680 | EnsemblPlantsGene:AT1G02680 | RefSeq:AT1G02680 | TAIR:AT1G02680 | RefSeq:AT1G02680-TAIR-G | EnsemblPlants:AT1G02680.1 |
| TAIR:AT1G02680.1 | EMBL:AY463615 | Unigene:At.42586 | EMBL:BT010482 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 |
| GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006366 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009960 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0046982 | GO:GO:0048316 |
| InterPro:Histone-fold | InterPro:IPR009072 | RefSeq:NP_171768.2 | ProteinID:OAP19626.1 | PFAM:PF02269 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR11380 | PANTHER:PTHR11380:SF5 | UniProt:Q6NQH4 | SUPFAM:SSF47113 | Symbol:TAF13 | InterPro:TFIID_TAF13 |
| UniParc:UPI00001BE4FC | SEG:seg | : | : | : | : |
Description
TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
Coordinates
chr1:+:580625..582310
Molecular Weight (calculated)
14255.0 Da
IEP (calculated)
5.811
GRAVY (calculated)
-0.604
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD
101: RELLAMQEEL KQARKAFDVD EKELVD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.