Factsheet for Os06t0649500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044810_P001	Maize	nucleus	17.89	90.7
KXG20501	Sorghum	nucleus	89.6	89.19
HORVU0Hr1G022460.1	Barley	nucleus	66.36	88.75
HORVU7Hr1G113760.2	Barley	nucleus	88.23	87.96
TraesCS5A01G317800.1	Wheat	nucleus	88.07	87.8
TraesCS5D01G324200.2	Wheat	nucleus	87.92	87.65
TraesCS5B01G318400.1	Wheat	nucleus	87.92	87.65
TraesCS7B01G416400.1	Wheat	nucleus	65.44	87.53
TraesCS7A01G508300.2	Wheat	nucleus	87.77	87.5
Zm00001d046810_P002	Maize	nucleus	89.91	87.37
TraesCS7D01G496500.1	Wheat	nucleus	86.7	87.1
GSMUA_Achr9P22400_001	Banana	cytosol	21.71	83.04
Zm00001d053142_P001	Maize	nucleus	20.03	81.37
Os07t0205200-02	Rice	cytosol, nucleus	31.04	80.24
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	21.25	75.96
KRH52333	Soybean	nucleus	71.87	70.89
KRH61671	Soybean	nucleus	72.48	70.85
Zm00001d016330_P001	Maize	extracellular	15.29	68.97
Solyc06g065700.2.1	Tomato	nucleus	69.72	66.57
GSMUA_Achr9P22410_001	Banana	cytosol	37.77	66.22
KRH05348	Soybean	nucleus	66.06	65.65
KRG99418	Soybean	cytosol, extracellular, plastid	8.72	65.52
GSMUA_Achr7P26980_001	Banana	nucleus	74.16	63.48
KRH15679	Soybean	cytosol	9.94	51.18
Os11t0660300-01	Rice	cytosol	11.77	23.84
Os07t0252000-01	Rice	cytosol	11.16	20.68
Os03t0355200-00	Rice	cytosol, nucleus, plastid	16.36	20.42
Os03t0355400-00	Rice	cytosol, nucleus, plastid	16.36	20.42
Os07t0405100-01	Rice	cytosol	16.36	19.28
Os04t0592700-01	Rice	nucleus	20.18	14.81
Os03t0151700-01	Rice	nucleus	16.97	11.81

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	EntrezGene:4341679	ProteinID:BAD37340.1
ProteinID:BAD38100.1	ProteinID:BAF20131.1	ProteinID:BAS98891.1	ProteinID:EEE66126.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264
EnsemblPlantsGene:Os06g0649500	EnsemblPlants:Os06t0649500-01	PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19879	UniProt:Q67UR9	SMART:SM00320	SUPFAM:SSF160897
SUPFAM:SSF50978	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI000042625F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015644092.1	SEG:seg	:

Description

OsWD40-132WD40 repeat-like domain containing protein. (Os06t0649500-01);TFIID subunit, WD40-associated region domain containing protein. (Os06t0649500-02)

Coordinates

chr6:+:26529305..26538020

Molecular Weight (calculated)

72994.3 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.412

Length

654 amino acids

Sequence
(BLAST)

001: MEDEEMEKKV QQYLQRKGFR LTELALQEER NRISTSSVSD VALARSENDP ARYYDGYSKL RTWAYSSLDQ YKHELLRVLY PVFIHSFMDL VAEGHTQEAR
101: SFFHTFHEDH ELMHSRDLQK LEGILSPSHL EEMELARSLR KNQFRIKLCE YSYELLLQYL QKTQALVVLG IINERTTFDV SPGQPSLISD DTDVVALVGT
201: KKDLAKQINL KEVHWGLLED SVEERMEKTL LESDKTEAES KDADAEDNNK RKSSEGGKQG GSVKKVKKDK IAGATGKTNK SETSIVSVAP RVKPELTLPV
301: IPVEVEQSIL EDLRNRAQLN SLALPSVSFY TFLNTHNGLN CSSISHDGSL VVGGFSDSSV KVWDMSKIGQ PPKTSSPQGE NGLSQGERTS ASDYGKRPYT
401: LFQGHSGPVY SAAFSPFGDF LLSSSSDSTI RLWSTKLNAN LVCYKGHNYP VWDVQFSPVG HYFASASHDR TARIWSMDKI QPLRIMAGHL SDVDCVQWHV
501: NCNYIATGSS DKTVRLWDVQ TGECIRMFIG HRSMVLSLAM SPDGRYMASG DEDGTIMMWD LSSGRCVSPL GGHSSCVWSL AYSCEGALLA SGSADCTVKL
601: WDVASSTKVL KTDDTSTNRL RMLKTLRTKS TPVYTLRFSR RNLLFAAGAL SLGS

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.