CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90111
EER94702
EES03919
EES15849
EES17247
KXG20501
KXG31790
KXG33694
OQU92338

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	KXG33694	AT1G17440.1	17340043
AT5G25150.1	KXG31790	AT1G27720.1	17340043
AT5G25150.1	OQU92338	AT1G27720.1	17340043
AT5G25150.1	EER90111	AT1G32750.1	17340043
AT5G25150.1	EER94702	AT1G54140.1	17340043
AT5G25150.1	EES03919	AT3G10070.1	17340043
AT5G25150.1	EES15849	AT4G34340.1	17340043
AT5G25150.1	EES17247	AT4G34340.1	17340043
AT5G25150.1	KXG20501	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046810_P002	Maize	nucleus	98.48	96.14
Zm00001d044810_P001	Maize	nucleus	18.57	94.57
Os06t0649500-01	Rice	nucleus	89.19	89.6
HORVU0Hr1G022460.1	Barley	nucleus	66.67	89.57
HORVU7Hr1G113760.2	Barley	nucleus	87.98	88.11
TraesCS5A01G317800.1	Wheat	nucleus	87.82	87.96
TraesCS5D01G324200.2	Wheat	nucleus	87.67	87.8
TraesCS7B01G416400.1	Wheat	nucleus	65.3	87.73
TraesCS5B01G318400.1	Wheat	nucleus	87.52	87.65
TraesCS7A01G508300.2	Wheat	nucleus	87.37	87.5
TraesCS7D01G496500.1	Wheat	nucleus	86.3	87.1
Zm00001d053142_P001	Maize	nucleus	21.16	86.34
GSMUA_Achr9P22400_001	Banana	cytosol	21.92	84.21
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	22.68	81.42
VIT_04s0008g05780.t01	Wine grape	nucleus	75.19	73.08
KRH52333	Soybean	nucleus	72.6	71.95
Zm00001d016330_P001	Maize	extracellular	15.83	71.72
KRH61671	Soybean	nucleus	72.75	71.45
GSMUA_Achr9P22410_001	Banana	cytosol	39.27	69.17
AT5G25150.1	Thale cress	nucleus	69.1	67.86
Bra036534.1-P	Field mustard	nucleus	68.65	67.52
CDX87098	Canola	nucleus	68.65	67.52
CDY19814	Canola	nucleus	68.49	67.37
Solyc06g065700.2.1	Tomato	nucleus	70.02	67.15
KRH05348	Soybean	nucleus	66.51	66.41
Bra020485.1-P	Field mustard	nucleus	66.97	66.07
CDY05473	Canola	nucleus	66.82	65.92
CDY05378	Canola	nucleus	66.51	65.81
GSMUA_Achr7P26980_001	Banana	nucleus	74.89	64.4
KRG99418	Soybean	cytosol, extracellular, plastid	8.37	63.22
KRH15679	Soybean	cytosol	9.59	49.61
EES08930	Sorghum	cytosol	12.02	24.53
KXG23186	Sorghum	plastid	8.52	22.95
EER98280	Sorghum	cytosol, nucleus, plastid	12.02	22.9
EER94850	Sorghum	plastid	15.98	20.19
EES11818	Sorghum	nucleus, plastid	15.68	17.11
EES12762	Sorghum	cytosol	20.7	15.33
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	3.5	12.78
OQU76815	Sorghum	plastid	3.81	11.85
EER95491	Sorghum	nucleus	16.74	11.74
OQU89577	Sorghum	plastid	3.5	10.8
OQU91217	Sorghum	plastid	3.96	10.57
OQU84751	Sorghum	plastid	3.04	9.85

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	UniProt:A0A194YLN1	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:IPR037264	EnsemblPlants:KXG20501	ProteinID:KXG20501	ProteinID:KXG20501.1	PFAM:PF00400
PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19879
SMART:SM00320	EnsemblPlantsGene:SORBI_3010G209400	SUPFAM:SSF160897	SUPFAM:SSF50978	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf
UniParc:UPI00022072BF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:55293227..55304915

Molecular Weight (calculated)

73183.6 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.372

Length

657 amino acids

Sequence
(BLAST)

001: MEDEEMEKKV QQYLQRKGFR LTELALQEER NRLSTSAISD VALARSDNDP ARYHDGYSRL RTWAYSSLDQ YKHELLRVLY PVFIHSFMDL VAEGHMQEAR
101: SFFHTFREDH EVMHSRDLQK LEGVLSPSHL EEMELARSFR KNKFKIKLCE YSYELLLQYL QKTQALVVLG VINEHITFEV SPGQPSLISD DADVVALIGT
201: SKDLAKQINQ KEVHWGLLED SVEERMEKAL AESDKIEAES KDADAEDNKK RNAEGGKQGA SLKKAKKDKL VGATGKNVRT ETSMVSVAPR VKPELTLPAT
301: PVEVEQSILE DLRNRAQLNS VALPSVSFYT FVNTHNGLNC SSISHDGSLV VGGFSDSSVK VWDMSKIGQP TKMSSSQSEN GSSQGERIST LDEGKRTYTL
401: FQGHSGPVYS AAFSPFGDFL LSSSSDSTIR LWSTKLNANL VCYKGHNYPV WDVQFSPVGH YFASASHDRT ARIWSMDKIQ PLRIMAGHLS DVDCVQWHVN
501: CNYIATGSSD KTVRLWDVQT GECIRMFIGH RSMVLSLAMS PDGRYMASGD EDGTIMIWDL STGRCVSPLL GHSSCVWTLA FSCEGALLAS GSADCTVKLW
601: DVASSTKTLK TEDTKGSSAN RLRLLKALPT KATPVYSLRF SRRNLLFASG ALSLSSS

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.