Factsheet for HORVU7Hr1G113760.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022460.1
HORVU2Hr1G031760.1
HORVU3Hr1G081440.3
HORVU3Hr1G081540.4
HORVU3Hr1G084430.4
HORVU3Hr1G085840.7
HORVU3Hr1G091670.2
HORVU3Hr1G100530.1
HORVU4Hr1G034590.13
HORVU6Hr1G032840.2
HORVU6Hr1G062340.1
HORVU7Hr1G006990.9
HORVU7Hr1G113760.2
HORVU7Hr1G115120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	HORVU3Hr1G085840.7	AT1G17440.1	17340043
AT5G25150.1	HORVU6Hr1G032840.2	AT1G17440.1	17340043
AT5G25150.1	HORVU4Hr1G034590.13	AT1G27720.1	17340043
AT5G25150.1	HORVU6Hr1G062340.1	AT1G27720.1	17340043
AT5G25150.1	HORVU7Hr1G115120.1	AT1G32750.1	17340043
AT5G25150.1	HORVU2Hr1G031760.1	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G081440.3	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G081540.4	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G091670.2	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G100530.1	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G084430.4	AT3G10070.1	17340043
AT5G25150.1	HORVU7Hr1G006990.9	AT4G34340.1	17340043
AT5G25150.1	HORVU0Hr1G022460.1	AT5G25150.1	17340043
AT5G25150.1	HORVU7Hr1G113760.2	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G022460.1	Barley	nucleus	74.54	100.0
TraesCS5A01G317800.1	Wheat	nucleus	98.32	98.32
TraesCS5D01G324200.2	Wheat	nucleus	98.17	98.17
TraesCS7A01G508300.2	Wheat	nucleus	98.02	98.02
TraesCS5B01G318400.1	Wheat	nucleus	97.87	97.87
TraesCS7D01G496500.1	Wheat	nucleus	96.49	97.23
TraesCS7B01G416400.1	Wheat	nucleus	71.95	96.52
Zm00001d044810_P001	Maize	nucleus	17.99	91.47
Os06t0649500-01	Rice	nucleus	87.96	88.23
KXG20501	Sorghum	nucleus	88.11	87.98
Zm00001d046810_P002	Maize	nucleus	88.26	86.03
GSMUA_Achr9P22400_001	Banana	cytosol	21.8	83.63
Zm00001d053142_P001	Maize	nucleus	20.12	81.99
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	21.49	77.05
VIT_04s0008g05780.t01	Wine grape	nucleus	74.24	72.04
Zm00001d016330_P001	Maize	extracellular	15.7	71.03
KRH52333	Soybean	nucleus	70.27	69.53
KRH61671	Soybean	nucleus	70.58	69.21
AT5G25150.1	Thale cress	nucleus	69.51	68.16
CDY19814	Canola	nucleus	69.21	67.96
Bra036534.1-P	Field mustard	nucleus	69.21	67.96
CDX87098	Canola	nucleus	68.75	67.52
GSMUA_Achr9P22410_001	Banana	cytosol	37.96	66.76
Solyc06g065700.2.1	Tomato	nucleus	69.36	66.42
KRH05348	Soybean	nucleus	66.01	65.81
CDY05473	Canola	nucleus	66.77	65.77
Bra020485.1-P	Field mustard	nucleus	66.46	65.47
CDY05378	Canola	nucleus	66.16	65.36
KRG99418	Soybean	cytosol, extracellular, plastid	8.54	64.37
GSMUA_Achr7P26980_001	Banana	nucleus	74.24	63.74
KRH15679	Soybean	cytosol	10.06	51.97
HORVU4Hr1G033170.1	Barley	cytosol	12.04	23.1
HORVU7Hr1G101230.1	Barley	cytosol	11.43	22.19
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	15.85	20.63
HORVU2Hr1G032990.1	Barley	cytosol	11.89	20.05
HORVU2Hr1G053480.9	Barley	mitochondrion	14.79	17.32
HORVU2Hr1G106110.11	Barley	mitochondrion	18.9	14.07
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	16.16	10.46

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	UniProt:A0A287XUX6	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU7Hr1G113760	EnsemblPlants:HORVU7Hr1G113760.2
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264	PFAM:PF00400	PFAM:PF04494
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19879	SMART:SM00320
SUPFAM:SSF160897	SUPFAM:SSF50978	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI000B484853	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chrchr7H:+:638085727..638096472

Molecular Weight (calculated)

73155.7 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.420

Length

656 amino acids

Sequence
(BLAST)

001: MEDEEMERKV QQYLHRKGFR LTELALQEER NRLSTTSLSD VSLSRPDNDP ARYYDGYNKL RTWAYNSLDQ YKHELLRVLY PAFIHCFMDL VSEGHTLEAR
101: QFFLKFREDH ELMHSRDLQK LEGTLSPLHL EEMDLARSLR QNKFRIKLCE YSYELLLQYL QKTQALVMLG IINERIIFEV SAGQPSLISD DADVVALVGT
201: SKDLAKQINQ KEVHWGLLED SVEERMEKAL SDSDRAEAES KDADAEDNNK KKSSEGGKQG GSLNKKLKKD KLVGPTGKNT KSETSMVSAA PRVKPELTLP
301: ATPVEVEQSI LEDLRNRAQL NNLALPSVSF YTFLNTHNGL NCSSISNDGS LVVGGFSDSS VKVWDMAKIG QPAKTPSSQG ENGSSQGEHL SSTSEGKKPY
401: TLFQGHSGPV YSAAFSPFGD FLLSSSSDST IRLWSTKLNA NLVCYKGHNY PVWDVQFSPV GHYFASASHD RTARIWSMDK IQPLRIMAGH LADVDCVQWH
501: VNCNYIATGS SDKTVRLWDV QTGECIRMFI GHRSMVLSLA MSPDGRYMAS GDEDGTIMMW DLSTGRCVSP LAGHNSCVWS LAFSCEGALL ASGSADCTVK
601: LWDVASSTKA LKMDDTKAGS TNRLRLLKAL PTKSTPVYNL RFSRRNLLFA SGALSL

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.