Factsheet for Os04t0592700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G446600.2	Wheat	mitochondrion	85.07	85.46
TraesCS2B01G468100.1	Wheat	nucleus	84.96	85.34
EES12762	Sorghum	cytosol	84.85	85.23
TraesCS2A01G447700.1	Wheat	mitochondrion	84.51	85.08
TraesCS7D01G500800.1	Wheat	mitochondrion	84.18	85.03
HORVU2Hr1G106110.11	Barley	mitochondrion	84.06	85.02
TraesCS7B01G423400.1	Wheat	nucleus	83.95	85.0
Zm00001d002483_P002	Maize	mitochondrion	83.5	81.76
Zm00001d026195_P002	Maize	cytosol	84.4	81.47
PGSC0003DMT400009959	Potato	cytosol	10.66	68.84
GSMUA_Achr11P...	Banana	mitochondrion	68.46	66.23
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	33.11	65.85
VIT_16s0039g01690.t01	Wine grape	cytosol	63.97	63.33
KRH03286	Soybean	nucleus	61.5	62.34
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	60.27	61.3
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	59.6	61.18
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	59.6	60.96
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.37	60.94
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.03	60.6
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	59.03	60.6
PGSC0003DMT400034226	Potato	cytosol	17.06	60.56
Solyc03g097160.2.1	Tomato	nucleus	59.03	60.39
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	59.37	60.32
KRH57076	Soybean	plasma membrane	57.24	60.28
Os11t0660300-01	Rice	cytosol	8.08	22.29
Os06t0649500-01	Rice	nucleus	14.81	20.18
Os07t0252000-01	Rice	cytosol	7.74	19.55
Os07t0405100-01	Rice	cytosol	10.21	16.4
Os03t0355400-00	Rice	cytosol, nucleus, plastid	9.54	16.22
Os03t0355200-00	Rice	cytosol, nucleus, plastid	9.54	16.22
Os03t0151700-01	Rice	nucleus	16.05	15.21
Os07t0205200-02	Rice	cytosol, nucleus	3.59	12.65
CDY12834	Canola	endoplasmic reticulum, extracellular	1.01	4.84

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	EntrezGene:4336833	EMBL:AK101611	ProteinID:BAF15632.1	ProteinID:BAS90766.1
ProteinID:CAE04134.3	ProteinID:EAZ31826.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0000462	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009880
GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034388	GO:GO:0051301	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os04g0592700	EnsemblPlants:Os04t0592700-01	PFAM:PF00400	PFAM:PF08625
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15
UniProt:Q0JAK5	SMART:SM00320	SUPFAM:SSF50978	InterPro:SSU_processome_Utp13	UniParc:UPI00001B1F1F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015637158.1	SEG:seg

Description

OsWD40-108WD40 repeat-like domain containing protein. (Os04t0592700-01)

Coordinates

chr4:-:29981606..29988159

Molecular Weight (calculated)

97566.0 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.203

Length

891 amino acids

Sequence
(BLAST)

001: MASSQGLKKN YRCDRSLQQF YTGGPFAVGS SPGGGEGEVE GGEAEAEAFL ACACGGEVRL VSAADASAIG EPIEGENEAV TALALSPDSR LLFTAGHSRL
101: IRVWDLASRT CTRSWKGHDG PIRAMACHAS GGLLATAGAD KKVCVWDVDG GFCTHFFRGH AGVVTTVMFH KDPKRLLLFS GSEDATVRVW NLESKKCVAV
201: LKEHFSAVTS LALSEDGQTL LSAGRDKIVN VWDVRKYNSK KTIPAFEMIE DVSFIGPGSN LLSCLGEPAN IKRKTDGYFL TVGERGVVRI WCLESAQCIY
301: EQQSSDVTVN TENEESRRGF TSAVMLSDDQ GLLCATADQQ FLFYCPTRTD GGDFQLNLYK RLVGYNDEIL DLKFVGEDEQ YLAVATNLEQ VRVYDVASMS
401: CSYVLSGHTE IVVCIDTCIS SSGKTLVVTG SKDSTVRLWD MERRSCIGIG KGHLGAIGSV AFSKKSKNFF VSGSSDRTIK IWSWDDTLDD VGSEVPLKAK
501: AVVAAHDKDI NSLSVSPNDG LVCSGSEDRT ACIWKLPNLV PSVVLKGHKR GIWSVEFSPV EQCVITSSGD RTVKIWAVAD GSCLKTFEGH TSSVLRASFL
601: SHGTQFVSCG SDGLVKLWTI KTNECIATFD KHDGKVWALA VGKKTEMLAT GGTDAVLNLW HDCTMEDKQE DFRKKEEELL RGQELENAVS DYDYAKAIQL
701: AFELRRPHRL LELFTQLCRE SDLEDPIEKA LIGLPKEGLR VLLEYIREWN TKPKLCHVAQ FVLFRVLRSL PPTDILEIKG ISELLEGLIP YSQRHFSRVD
801: RLVRSTFLLD YTLTRMSVVD PDIDEGTTRD DANGSSVENC EIAQAKPDAL VAEENLQKSV KKRKSSKSSK KGGKKVKIAS TGGSKDVPIE A

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.