CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	97.35	97.01
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	94.59	94.59
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	95.16	94.18
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	91.59	90.75
PGSC0003DMT400009959	Potato	cytosol	11.18	70.29
Solyc03g097160.2.1	Tomato	nucleus	64.52	64.29
TraesCS7D01G500800.1	Wheat	mitochondrion	61.52	60.54
TraesCS2A01G447700.1	Wheat	mitochondrion	61.52	60.34
TraesCS2D01G446600.2	Wheat	mitochondrion	61.64	60.32
TraesCS2B01G468100.1	Wheat	nucleus	61.52	60.2
TraesCS7B01G423400.1	Wheat	nucleus	60.94	60.11
HORVU2Hr1G106110.11	Barley	mitochondrion	60.83	59.93
Os04t0592700-01	Rice	nucleus	61.18	59.6
GSMUA_Achr11P...	Banana	mitochondrion	62.67	59.07
EES12762	Sorghum	cytosol	59.79	58.51
Zm00001d002483_P002	Maize	mitochondrion	59.68	56.92
Zm00001d026195_P002	Maize	cytosol	59.91	56.34
PGSC0003DMT400034226	Potato	cytosol	16.13	55.78
CDY03567	Canola	cytosol	7.95	21.5
CDY14200	Canola	cytosol	7.95	21.5
CDX68590	Canola	cytosol	7.83	21.18
CDY43529	Canola	cytosol	7.83	21.18
CDX76728	Canola	cytosol	7.26	18.21
CDY11502	Canola	cytosol	7.26	18.21
CDX87098	Canola	nucleus	13.48	17.52
CDY19814	Canola	nucleus	13.48	17.52
CDY05378	Canola	nucleus	13.02	17.02
CDY05473	Canola	nucleus	12.9	16.82
CDY57442	Canola	cytosol	3.92	15.45
CDY18648	Canola	cytosol	10.14	15.38
CDX79933	Canola	nucleus	7.49	15.15
CDY54973	Canola	nucleus	16.24	15.14
CDY22910	Canola	nucleus	16.13	15.04
CDY23845	Canola	nucleus	7.37	14.88
CDX81324	Canola	cytosol	10.48	14.82
CDY06918	Canola	cytosol, nucleus, peroxisome	7.72	13.81
CDY12836	Canola	extracellular, vacuole	1.27	12.94
CDY41854	Canola	cytosol	8.06	12.87
CDY14776	Canola	mitochondrion	7.72	12.14
CDY57444	Canola	cytosol, mitochondrion	4.03	12.07
CDX77335	Canola	cytosol	5.53	11.37
CDY12834	Canola	endoplasmic reticulum, extracellular	1.84	8.6
CDY72066	Canola	cytosol	0.58	4.42
CDY43370	Canola	cytosol	0.58	4.42
CDX92625	Canola	cytosol	0.58	4.42
CDY40782	Canola	cytosol	0.58	4.42
CDY27109	Canola	cytosol	0.58	4.42

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	GO:A0A078HLA1	UniProt:A0A078HLA1	EnsemblPlants:CDY38089	ProteinID:CDY38089
ProteinID:CDY38089.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0032040	EnsemblPlantsGene:GSBRNA2T00065356001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF08625	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854
PANTHER:PTHR19854:SF15	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:SSU_processome_Utp13
UniParc:UPI0004EE7221	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC02g06840DBnaC02g06840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLA1]

Coordinates

chrLK032416:+:46935..51804

Molecular Weight (calculated)

95592.4 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.217

Length

868 amino acids

Sequence
(BLAST)

001: MAPQSLKKNY RCSRSLKQFY SGGPFIVSSD GSFIVCACGD AINIVEASDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRTWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VGGGFCTHYF KGHKGVVSSI LFHPDANKNI LISGSDDATV RVWDLMAKNT EKKCLAILDK HFSAVSSIAL
201: SGDGLTLLTA GRDKVVNVWD LHDYSCKTTV ATYEVLEAVT IVSSGSPFAS FVASLDQKSK KKKASSQETH FITLGERGVV RIWKSEGAVC LYEQKSSDIT
301: VSSDDEESKR GFTAAAMLPS DRGLLCVTAD QQFFIYSVVE NVEEPELVLS KRLVGYNEEI SDMKFLGDEE QFLAVATNLE EVRVYDVATM SCSYVLAGHK
401: EVVLSLDTCV SSSGNVLVVT GSKDKTVRLW NATSQSCIGV GTGHNGDILA VAFAKKSFSF FVSGSGDRTL KVWSLDGISE DSEDPINLKT RSVVAAHDKD
501: INSVAVARND SLVCTGSEDR TASIWRLPDL VHVVTLKGHK RRIFSVEFSP VDQCVMTASG DKTVKIWAIS DGSCLKTFEG HTSSVLRGSF ITDGTQFVSC
601: GADGLLKLWN VNTSECIATY DQHEDKVWAL AVGKKTEMVA TGGGDAVINI WHDSTASDKE DEFRKEEETI LRGQELENAV LDAEYTKAIR LAFELRRPHK
701: VYELFAGLCK KRESDDQIVK ALQGLEKEEF RLLFEYLREW NTKPNRCHIA QFVLYQTFNI LPPTEIVQVK GIGELLEGLI PYSQRHFNRM DRFVRSSFLL
801: DYTLGEMSVI DPETETEYPK DKKIKEESNA SVSADQKTPS RKRKSQKSKD RSSKKRLVAE AQGNIIAV

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.