Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009959 | Potato | cytosol | 26.69 | 48.55 |
| Solyc03g097160.2.1 | Tomato | nucleus | 70.92 | 20.44 |
| KRG88454 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 32.27 | 18.08 |
| VIT_16s0039g01690.t01 | Wine grape | cytosol | 64.14 | 17.89 |
| KRH57076 | Soybean | plasma membrane | 59.76 | 17.73 |
| KRH03286 | Soybean | nucleus | 60.96 | 17.41 |
| EES12762 | Sorghum | cytosol | 61.35 | 17.36 |
| TraesCS7B01G423400.1 | Wheat | nucleus | 60.16 | 17.16 |
| TraesCS2A01G447700.1 | Wheat | mitochondrion | 60.16 | 17.06 |
| Os04t0592700-01 | Rice | nucleus | 60.56 | 17.06 |
| HORVU2Hr1G106110.11 | Barley | mitochondrion | 59.76 | 17.03 |
| TraesCS2B01G468100.1 | Wheat | nucleus | 60.16 | 17.02 |
| TraesCS7D01G500800.1 | Wheat | mitochondrion | 59.76 | 17.01 |
| TraesCS2D01G446600.2 | Wheat | mitochondrion | 59.76 | 16.91 |
| GSMUA_Achr11P... | Banana | mitochondrion | 60.96 | 16.61 |
| Zm00001d002483_P002 | Maize | mitochondrion | 60.16 | 16.59 |
| Zm00001d026195_P002 | Maize | cytosol | 60.96 | 16.58 |
| CDY16982 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.97 | 16.31 |
| CDX69423 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.18 | 16.24 |
| AT5G16750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 56.57 | 16.21 |
| Bra008598.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 55.78 | 16.13 |
| CDY38089 | Canola | cytosol, mitochondrion, nucleus, plastid | 55.78 | 16.13 |
| Bra023582.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 55.78 | 16.13 |
| CDX85488 | Canola | cytosol, mitochondrion, nucleus, plastid | 55.78 | 16.07 |
| PGSC0003DMT400043378 | Potato | cytosol | 9.56 | 8.82 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 9.96 | 7.08 |
| PGSC0003DMT400000871 | Potato | cytosol | 8.37 | 6.5 |
| PGSC0003DMT400041481 | Potato | cytosol | 7.57 | 5.88 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 19.52 | 5.22 |
| PGSC0003DMT400039889 | Potato | cytosol | 1.2 | 5.17 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.56 | 4.99 |
| PGSC0003DMT400093026 | Potato | cytosol | 9.56 | 4.7 |
| PGSC0003DMT400066026 | Potato | nucleus | 17.53 | 4.63 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 9.96 | 4.29 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0032040 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1B0C4 | PFAM:PF00400 | PFAM:PF08625 |
| EnsemblPlantsGene:PGSC0003DMG400013158 | PGSC:PGSC0003DMG400013158 | EnsemblPlants:PGSC0003DMT400034226 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19854 |
| PANTHER:PTHR19854:SF15 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:SSU_processome_Utp13 | UniParc:UPI0002959CED | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
WD40-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013158]
Coordinates
chr9:+:9433429..9436016
Molecular Weight (calculated)
28328.9 Da
IEP (calculated)
6.311
GRAVY (calculated)
-0.258
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: VRLWDCENKA CVGIGIGHMG AVGAVALSKK QQNFFVSGSS DRTLKVWNMD GVTGNNEEII TLKAKAVVAA HDKDINSLAV APNDSLVCSD SDGFIKLWTV
101: RNEECIATFD QHDDKEEGVL RVQELKNALI DADYTRAIQI AFELRRPHGL LDIFTELHRK RDAGDQIVKA VDALSKEELR LHLEYIREWN TKTVLSYSNF
201: FLSCTPITKM IEIKGNEGVL EGLIAYTQRH FNRLVGLERE NHMLGYTSYR M
101: RNEECIATFD QHDDKEEGVL RVQELKNALI DADYTRAIQI AFELRRPHGL LDIFTELHRK RDAGDQIVKA VDALSKEELR LHLEYIREWN TKTVLSYSNF
201: FLSCTPITKM IEIKGNEGVL EGLIAYTQRH FNRLVGLERE NHMLGYTSYR M
001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV
Arabidopsis Description
TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.