Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g039190.1.1 | Tomato | nucleus | 96.84 | 96.84 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 84.63 | 85.62 |
| VIT_08s0007g04690.t01 | Wine grape | nucleus | 74.95 | 74.79 |
| KRG96051 | Soybean | nucleus | 72.84 | 73.31 |
| KRH67774 | Soybean | nucleus, plastid | 72.53 | 73.06 |
| CDY22910 | Canola | nucleus | 68.95 | 70.35 |
| CDY54973 | Canola | nucleus | 68.95 | 70.35 |
| Bra039543.1-P | Field mustard | nucleus | 69.16 | 69.6 |
| AT3G21540.1 | Thale cress | nucleus | 68.74 | 68.38 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 66.11 | 66.81 |
| TraesCS4A01G370000.1 | Wheat | nucleus | 60.84 | 61.49 |
| TraesCS4B01G317800.1 | Wheat | nucleus | 60.74 | 61.38 |
| Os03t0151700-01 | Rice | nucleus | 60.11 | 60.74 |
| EER95491 | Sorghum | nucleus | 59.79 | 60.62 |
| Zm00001d027706_P004 | Maize | nucleus | 60.42 | 59.85 |
| HORVU4Hr1G083410.1 | Barley | endoplasmic reticulum | 60.84 | 57.06 |
| PGSC0003DMT400041481 | Potato | cytosol | 8.32 | 24.46 |
| PGSC0003DMT400000871 | Potato | cytosol | 7.68 | 22.6 |
| PGSC0003DMT400009959 | Potato | cytosol | 3.26 | 22.46 |
| PGSC0003DMT400043378 | Potato | cytosol | 6.21 | 21.69 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 7.58 | 20.4 |
| PGSC0003DMT400039889 | Potato | cytosol | 1.16 | 18.97 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.47 | 18.71 |
| PGSC0003DMT400093026 | Potato | cytosol | 10.0 | 18.59 |
| PGSC0003DMT400034226 | Potato | cytosol | 4.63 | 17.53 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 10.53 | 17.15 |
Protein Annotations
| EntrezGene:102603891 | MapMan:17.1.3.2.1.3.3 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1CEX8 |
| PFAM:PF00400 | PFAM:PF04003 | EnsemblPlantsGene:PGSC0003DMG400025700 | PGSC:PGSC0003DMG400025700 | EnsemblPlants:PGSC0003DMT400066026 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19853 | PANTHER:PTHR19853:SF0 | SMART:SM00320 |
| SUPFAM:SSF117289 | SUPFAM:SSF50978 | InterPro:SSU_processome_Utp12 | UniParc:UPI0002955FE9 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_006338893.1 | SEG:seg | : |
Description
WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025700]
Coordinates
chr10:-:23429954..23438317
Molecular Weight (calculated)
104792.0 Da
IEP (calculated)
6.799
GRAVY (calculated)
-0.304
Length
950 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAYLRYEP AASFGVIVSG ESNIAYDSSG KHLLAAALEK IGIWHVRQGL CTKTLAPLPS SNSKGPSLAV TSMASSSSSQ IASGYAEGSI RIWDSDKGIC
101: ETTLNGHKGA VTALRYNKLG SLLASGSKDN DIILWDVVGE TGLFRLRGHR DQVTDLVFLD SDKKLVTASK DKFLRVWDLD TQHCMQIISG HHTEIWSIDI
201: DPEERFLVTG SADPELRFYA IKHELADGQL IANKNETDVK DLPTENKWEV LKSFGEIQRQ SKDRVATVRF NKSGNLLACQ VAGKTVEIFR VLDESESKRK
301: AKRRISRKKE KKSAKEGLEA TEKGETNIGA EGGSNPVVTV LDIFKLHQTL RAGKKISSIS FSPLTSKNSL ATLALSLNNN LLEFHAIESN STSKLSAIEL
401: QGHRADVRSV TLSSDNTLLM STSHSAIKIW NPTTGSCLRT IDSGYGLCGL FVPGNKYAVV GTKGGTLEFI DVRSGTCVEV VEAHGGSVQS IALTPDGTGF
501: LTGSADHDIK FWEFQMVQKS GEGSKHLTAS PTSSLKMNDD VLVVAASPDG KFIAVALLDS TVKVFYMDSL KFFLSLYGHK LPVLCMDISS DGDLLVSGSA
601: DKNVKIWGLD FGDCHKSLFA HADSVMGVKF VRNTHYFFTV GKDRLVKYWD ADKFELLLTL EGHHAEVWCL AMSNRGDFVV TGSHDRSIRR WDRTDEPFFI
701: EEEKEKRLEE MFESDIDNAF ENKYGSKEEI PEEGAVALAG KKTQETLTAT DSIIEALDMA DAELKRIAEH EEDKSKGRVS EFRSNILMLG QSPSDYVLRA
801: LSSVHTNDLE QTLMALPFSD ALDLLSYLES WASAIDKVEL VGRVAVLLVQ LHHHQLVSTV SARPLITRLG DILPAKVKGC QDIMGYNLAG MDHSTQLVSS
901: RSDAVFRDEK TKLLEIRSHN AKRTEEREDT KQEKKRKKKQ KKSDGGHVWS
101: ETTLNGHKGA VTALRYNKLG SLLASGSKDN DIILWDVVGE TGLFRLRGHR DQVTDLVFLD SDKKLVTASK DKFLRVWDLD TQHCMQIISG HHTEIWSIDI
201: DPEERFLVTG SADPELRFYA IKHELADGQL IANKNETDVK DLPTENKWEV LKSFGEIQRQ SKDRVATVRF NKSGNLLACQ VAGKTVEIFR VLDESESKRK
301: AKRRISRKKE KKSAKEGLEA TEKGETNIGA EGGSNPVVTV LDIFKLHQTL RAGKKISSIS FSPLTSKNSL ATLALSLNNN LLEFHAIESN STSKLSAIEL
401: QGHRADVRSV TLSSDNTLLM STSHSAIKIW NPTTGSCLRT IDSGYGLCGL FVPGNKYAVV GTKGGTLEFI DVRSGTCVEV VEAHGGSVQS IALTPDGTGF
501: LTGSADHDIK FWEFQMVQKS GEGSKHLTAS PTSSLKMNDD VLVVAASPDG KFIAVALLDS TVKVFYMDSL KFFLSLYGHK LPVLCMDISS DGDLLVSGSA
601: DKNVKIWGLD FGDCHKSLFA HADSVMGVKF VRNTHYFFTV GKDRLVKYWD ADKFELLLTL EGHHAEVWCL AMSNRGDFVV TGSHDRSIRR WDRTDEPFFI
701: EEEKEKRLEE MFESDIDNAF ENKYGSKEEI PEEGAVALAG KKTQETLTAT DSIIEALDMA DAELKRIAEH EEDKSKGRVS EFRSNILMLG QSPSDYVLRA
801: LSSVHTNDLE QTLMALPFSD ALDLLSYLES WASAIDKVEL VGRVAVLLVQ LHHHQLVSTV SARPLITRLG DILPAKVKGC QDIMGYNLAG MDHSTQLVSS
901: RSDAVFRDEK TKLLEIRSHN AKRTEEREDT KQEKKRKKKQ KKSDGGHVWS
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.