Factsheet for VIT_16s0039g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	13.33	83.33
PGSC0003DMT400009959	Potato	cytosol	12.56	81.88
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	38.78	77.9
KRH03286	Soybean	nucleus	71.44	73.15
Solyc03g097160.2.1	Tomato	nucleus	69.11	71.41
KRH57076	Soybean	plasma membrane	66.89	71.16
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	69.0	70.89
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	68.0	70.51
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.44	69.93
GSMUA_Achr11P...	Banana	mitochondrion	66.89	65.36
TraesCS2B01G468100.1	Wheat	nucleus	64.22	65.16
TraesCS2A01G447700.1	Wheat	mitochondrion	64.0	65.08
TraesCS7D01G500800.1	Wheat	mitochondrion	63.78	65.08
TraesCS2D01G446600.2	Wheat	mitochondrion	64.11	65.05
HORVU2Hr1G106110.11	Barley	mitochondrion	63.56	64.93
TraesCS7B01G423400.1	Wheat	nucleus	63.44	64.89
EES12762	Sorghum	cytosol	63.56	64.49
PGSC0003DMT400034226	Potato	cytosol	17.89	64.14
Os04t0592700-01	Rice	nucleus	63.33	63.97
Zm00001d002483_P002	Maize	mitochondrion	63.0	62.31
Zm00001d026195_P002	Maize	cytosol	63.22	61.65
VIT_08s0007g03360.t01	Wine grape	cytosol	8.22	21.51
VIT_13s0084g00760.t01	Wine grape	plastid	2.56	20.91
VIT_11s0016g01730.t01	Wine grape	cytosol	7.33	20.56
VIT_04s0008g05780.t01	Wine grape	nucleus	13.67	18.2
VIT_18s0001g09610.t01	Wine grape	cytosol	4.22	17.35
VIT_08s0007g04690.t01	Wine grape	nucleus	17.33	16.39
VIT_07s0129g00690.t01	Wine grape	nucleus	10.22	15.41
VIT_08s0007g05930.t01	Wine grape	nucleus	9.22	12.59
VIT_18s0001g09600.t01	Wine grape	cytosol	7.22	11.88
CDY12834	Canola	endoplasmic reticulum, extracellular	1.44	6.99

Protein Annotations

EntrezGene:100252767	wikigene:100252767	MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	ProteinID:CCB50588	ProteinID:CCB50588.1
ncoils:Coil	UniProt:F6HEE2	EMBL:FN595750	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166	GO:GO:0000462
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004611	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005975	GO:GO:0006094	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0017076	GO:GO:0030515	GO:GO:0032040	GO:GO:0034388
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100252767	wikigene:LOC100252767	PFAM:PF00400
PFAM:PF08625	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854
PANTHER:PTHR19854:SF15	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:SSU_processome_Utp13
TIGR:TC57715	UniParc:UPI00015C8EE2	ArrayExpress:VIT_16s0039g01690	EnsemblPlantsGene:VIT_16s0039g01690	EnsemblPlants:VIT_16s0039g01690.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002272675	RefSeq:XP_002272675.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:1304345..1316276

Molecular Weight (calculated)

99399.2 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.201

Length

900 amino acids

Sequence
(BLAST)

001: MASPTLKKNY RSTPALQQFY TGGPFAVASD GSFIVCACDD AIKIVDSSNA SIRSVVEGDS QTVTALALSP DDRLLFSSSH SRQIRVWELS SLKCIRSWKG
101: HEGPVMGMAC DASGGVLATA GADRKVLVWD VDGGYCTHYF KGHKGVVTSI IFHPDVNRLL LVSGSDDATV RVWDLMSKKC VATLERHFSA VTSLAVSEDG
201: WTLLSAGRDK AGLHLFFIFT ADMVVNLWDL HDYSCKLTVP TYEVLEGVCV IHSKSPFASS LDSYKRQKGR KKKSESPAIY FITVGERGTV RIWNSEGAVC
301: LFEQQSSDVT VSSDSDDSKR GFTAATILPL DQGLLCVTVD QQFLFYSTLT HSEEMLKLML SKRLVGYNEE IVDMKFLGED EQFLAVATNL EQVQVYDLAS
401: MSCSYVLSGH TGIVLCLDTC VSSSGRTFVV TGSKDNSVRL WESESRCCIG VGTGHTGAVG AVAFSKKLRN FFVSGSSDRT LKVWSLDGLS DDTEQPISLK
501: AKAVVAAHDK DINSLAVAPN DSLVCSGSQD RTACVWRLPD LVSVVVLKGH KRGVWSVEFS PVDQCVMTAS GDKTIKIWAI SDGSCLKTFE GHTSSVLRAS
601: FLTRGTQVVS CGADGLVKLW TIKTNECIAT YDQHEDKVWA LAVGKKTEML ATGGSDAVVN LWHDSTASDK EEAFRKEEEG VLKGQELENA LSDTDYTKAI
701: QIAFELRRPH KLFELFSELS RKREAAEQVE KALHALGKEE FRLLLEYVRE WNTKPKLCHV AQFVLFRVFS MLPPTEITEM RGIGELLEGI IPYSQRHFSR
801: MDRLIRGTYL LDYTLTGMSV IEPETDAKEI KDEPETWPEV KDSGDWPSPE NADEEQEQTL EGLKEKASSK KRKSRKSRDR AQKKVKETAY TKISAISLQA

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.