Factsheet for VIT_00s0214g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01690.t01	Wine grape	cytosol	83.33	13.33
VIT_08s0007g04690.t01	Wine grape	nucleus	17.36	2.63
VIT_04s0008g05780.t01	Wine grape	nucleus	9.72	2.07
VIT_08s0007g05930.t01	Wine grape	nucleus	8.33	1.82
VIT_07s0129g00690.t01	Wine grape	nucleus	6.25	1.51
VIT_18s0001g09600.t01	Wine grape	cytosol	5.56	1.46
VIT_11s0016g01730.t01	Wine grape	cytosol	2.78	1.25
VIT_18s0001g09610.t01	Wine grape	cytosol	0.69	0.46
VIT_08s0007g03360.t01	Wine grape	cytosol	0.69	0.29
VIT_13s0084g00760.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EMBL:AM454559	ProteinID:CAN63340	ProteinID:CAN63340.1	ProteinID:CCB60969
ProteinID:CCB60969.1	UniProt:F6I202	EMBL:FN596523	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030515	GO:GO:0032040	GO:GO:0034388	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002109777	ArrayExpress:VIT_00s0214g00020	EnsemblPlantsGene:VIT_00s0214g00020	EnsemblPlants:VIT_00s0214g00020.t01
unigene:Vvi.21807	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

No Description!

Coordinates

chrUn:-:13292356..13292940

Molecular Weight (calculated)

15681.4 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.039

Length

144 amino acids

Sequence
(BLAST)

001: MASWALKKNY RSATTLHQFY TGGSFAIASD GSFIVCARDD AIKIVDSSNA AIRSAVEDDS QIVTTLALSP DDILLFSSSH SRQIRVWKLS SLTCIRPWRG
101: HEGPVMGMAC DASGGELATV GADRKVLVWD VDEAYCTHYF KDAS

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.