Factsheet for VIT_18s0001g09610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0084g00760.t01	Wine grape	plastid	8.22	16.36
VIT_08s0007g03360.t01	Wine grape	cytosol	19.63	12.5
VIT_11s0016g01730.t01	Wine grape	cytosol	16.44	11.21
VIT_07s0129g00690.t01	Wine grape	nucleus	22.83	8.38
KXG23186	Sorghum	plastid	8.68	7.79
VIT_04s0008g05780.t01	Wine grape	nucleus	22.83	7.4
VIT_18s0001g09600.t01	Wine grape	cytosol	18.26	7.31
VIT_08s0007g05930.t01	Wine grape	nucleus	18.72	6.22
CDY12836	Canola	extracellular, vacuole	2.28	5.88
VIT_16s0039g01690.t01	Wine grape	cytosol	17.35	4.22
VIT_08s0007g04690.t01	Wine grape	nucleus	16.44	3.78
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	0.46	0.69
CDY43370	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ProteinID:CCB45780	ProteinID:CCB45780.1	UniProt:F6GZV9	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22846	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000210A334	ArrayExpress:VIT_18s0001g09610	EnsemblPlantsGene:VIT_18s0001g09610	EnsemblPlants:VIT_18s0001g09610.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

No Description!

Coordinates

chr18:-:8020876..8028101

Molecular Weight (calculated)

24312.6 Da

IEP (calculated)

5.887

GRAVY (calculated)

-0.481

Length

219 amino acids

Sequence
(BLAST)

001: MEEDEEQGNS KEKEKPLDDH IDTKVYEDKV NIGHEENGTC EGNLHCVSLA RSFYPTSNYR LKTMEISPSS TCLPCEIPSC DVKVLEGLTS EVFACAWSPA
101: GSFLASGCHD VHAVWFITNG PCSTMQNGLL NIVLKHFRGR TNEKNKDVTT LDWNGDGTVL ATGSYDNQAR IWSRVGMLFY TLNKHKGPVF SLKWNKKGDN
201: LLSGSMDKTA IVWGVKTGE

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.