CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 2
plastid 1
cytosol 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04500	Soybean	cytosol	44.07	98.21
KRH04503	Soybean	nucleus	50.8	94.91
KRH28415	Soybean	nucleus	73.4	82.08
KRH04498	Soybean	mitochondrion	33.65	80.46
VIT_07s0129g00690.t01	Wine grape	nucleus	75.0	78.39
CDY57442	Canola	cytosol	26.76	75.91
CDY18648	Canola	cytosol	65.38	71.33
AT5G67320.1	Thale cress	cytosol	70.03	71.29
Bra037118.1-P	Field mustard	cytosol	68.27	69.61
CDX81324	Canola	cytosol	67.95	69.06
Os07t0405100-01	Rice	cytosol	60.42	67.93
TraesCS2A01G227200.3	Wheat	cytosol	60.26	67.26
TraesCS2D01G235100.1	Wheat	nucleus	59.78	67.09
TraesCS2B01G255700.1	Wheat	nucleus	59.94	67.03
Zm00001d025048_P003	Maize	cytosol	60.1	66.84
GSMUA_Achr6P34780_001	Banana	cytosol	49.84	66.31
KRH61363	Soybean	nucleus	59.29	65.14
HORVU2Hr1G053480.9	Barley	mitochondrion	57.21	63.75
EES11818	Sorghum	nucleus, plastid	60.9	63.12
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	60.26	62.88
KRH52050	Soybean	cytosol, nucleus, peroxisome	60.26	58.84
GSMUA_Achr6P34790_001	Banana	extracellular	14.26	57.05
CDY57444	Canola	cytosol, mitochondrion	20.51	44.14
KRH67917	Soybean	cytosol	14.58	26.53
KRH33352	Soybean	plastid	10.1	24.8
KRG99418	Soybean	cytosol, extracellular, plastid	3.04	21.84
KRH15679	Soybean	cytosol	4.33	21.26
KRH02663	Soybean	cytosol, nucleus	10.58	20.56
KRH19247	Soybean	cytosol, endoplasmic reticulum	10.58	20.56
KRH72083	Soybean	nucleus	16.99	18.6
KRH31616	Soybean	nucleus	16.83	18.42
KRH05348	Soybean	nucleus	15.87	15.05
KRH61671	Soybean	nucleus	16.03	14.95
KRH52333	Soybean	nucleus	15.71	14.78
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	10.42	14.51
KRG94333	Soybean	cytosol	4.49	13.86
KRH03286	Soybean	nucleus	13.62	9.67
KRG96051	Soybean	nucleus	14.58	9.64
KRH57076	Soybean	plasma membrane	12.98	9.57
KRH67774	Soybean	nucleus, plastid	14.26	9.44

Protein Annotations

Gene3D:1.20.960.30	EntrezGene:100810406	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	EMBL:ACUP02003187	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_05G100500	GO:GO:0000118	GO:GO:0003674	GO:GO:0003714	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	GO:GO:1903507	UniProt:I1K293
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH58014	ProteinID:KRH58014
ProteinID:KRH58014.1	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320
SMART:SM00667	SUPFAM:SSF50978	UniParc:UPI00023C53DA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:26669951..26687648

Molecular Weight (calculated)

71316.6 Da

IEP (calculated)

6.171

GRAVY (calculated)

-0.836

Length

624 amino acids

Sequence
(BLAST)

001: MASISSAELN YLVYRYLQES GFTHAAFTFG YEAGINKCSI DGNLVPSGAL VTFVQKGLQY FEMEANLSNC DADLEEDFSF LQPLDLITKD VHELRQMISE
101: RRKKLQKERK KEFEKEHEGE RVRVREKDRR EREKEVEKER REREKEVEKD RREREKEVEK DRREREKEVE KDRREKEKEV EKDRREKEKE VEKDRREREK
201: EVVKDRKKIE NDKEREQQHG DQTVREMFVD HEDRVPVKLE ENGAVGGPEP MDISTTSTSQ LCGIPSSDVT ILEGHTSEVC ACAWSPTGSL LASGSGDSTA
301: RIWTIAEGRC KPGSENGPLN VLVLKHVRGK TNEKSKDVTT LDWNGEGTLL ATGSYDGQAR IWTTNGELKS TLSKHKGPIF SLKWNKKGDY LLTGSCDQTA
401: IVWDVKAEEW KQQFEFHSGP TLDVDWRNNV SFATSSTDNM IHVCKIGETH PIKTFTGHQG EVNCVKWDPT GSLLASCSDD ITAKIWSMKQ DTYLHDLREH
501: SKEIYTIRWS PTGPGTNNPN HKLVLASASF DSTVKLWDVE LGKLIYSLDG HRHPVYSVAF SPNGDYLVSG SLDRSMHIWS LRDGKIVKTY TGNGGIFEVC
601: WNKEGDKIAA CFANNTVCVL DFRM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.