Factsheet for Solyc12g088620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 3
plastid 1
cytosol 2
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.65	84.37
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.62	82.7
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.9	82.1
Solyc12g088570.1.1	Tomato	cytosol	54.41	78.02
Solyc12g088630.1.1	Tomato	cytosol	67.43	68.88
Solyc12g049100.1.1	Tomato	cytosol	45.79	67.71
Solyc04g078320.2.1	Tomato	cytosol	68.77	60.64
Os07t0405100-01	Rice	cytosol	61.69	58.02
Zm00001d025048_P003	Maize	cytosol	62.26	57.93
TraesCS2D01G235100.1	Wheat	nucleus	60.54	56.83
TraesCS2B01G255700.1	Wheat	nucleus	60.73	56.81
TraesCS2A01G227200.3	Wheat	cytosol	60.73	56.71
KRH61363	Soybean	nucleus	60.73	55.81
HORVU2Hr1G053480.9	Barley	mitochondrion	58.43	54.46
EES11818	Sorghum	nucleus, plastid	62.45	54.15
GSMUA_Achr6P34780_001	Banana	cytosol	48.28	53.73
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	60.54	52.84
KRH52050	Soybean	cytosol, nucleus, peroxisome	60.92	49.77
GSMUA_Achr6P34790_001	Banana	extracellular	14.75	49.36
Solyc09g074400.2.1	Tomato	cytosol	16.48	24.5
Solyc12g009030.1.1	Tomato	cytosol, nucleus	13.41	21.67
Solyc07g041080.2.1	Tomato	cytosol, nucleus	13.03	21.05
Solyc09g009410.2.1	Tomato	cytosol, nucleus	13.22	19.83
Solyc04g016510.2.1	Tomato	nucleus	16.09	17.21
Solyc06g065700.2.1	Tomato	nucleus	17.82	13.58
Solyc03g097160.2.1	Tomato	nucleus	16.48	9.87
Solyc10g039190.1.1	Tomato	nucleus	17.62	9.68

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118	GO:GO:0003674
GO:GO:0003714	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538
GO:GO:1903507	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR017986	UniProt:K4DGT3	InterPro:LisH
PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667
SUPFAM:SSF50998	EnsemblPlantsGene:Solyc12g088620.1	EnsemblPlants:Solyc12g088620.1.1	UniParc:UPI000276944E	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:63896581..63899744

Molecular Weight (calculated)

58244.0 Da

IEP (calculated)

6.204

GRAVY (calculated)

-0.322

Length

522 amino acids

Sequence
(BLAST)

001: MASLTSEFLN FIVFRYLSES GFTHAAFTFG YEAGINRSAI DGHLVPPGAL VQFVQKGIQY LELESNLGND DTDMNEDFKL LEPLDLITKD VDELRKIIKE
101: KKEKVQKGKV NADHKREPTR NSEMEKQQKD RERSDVMVLE GHTSEVFACA WSPEGSLLAS GSGDATARIW TIGDGPCNST IPNVLVLNHL ESQATEENKD
201: VTSLDWNREG TLLATGSYDG QARIWKRSGE LVSTLDKHKG PIISLKWNEK GDYLLSGSID TTAVVWNVKS GESKQQFDFH SGVLSQLFFI LYLISKQGQI
301: LFCFAYVLIV VKQPHVGPLL DVSWRNNDSF ATSSADNMIY VCKVGENKPV KKFSGHQDEI NAIKWDPSGS LLASCSDDTT VKLWSMKQNV CLHDFREHSK
401: EVHTVKWSPA GAGTSDRNQQ LLLASASFDC TVKLWDVELG RLLQSLSGHR ESVYSISFSP NGEYMASGSL DKCMNIWSIK EAKIVRTYNG DGAIFEVCWN
501: KQGSKVAACF ANKKVCVFDM RL

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.