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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g021650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G29830.1 Solyc02g021650.2.1 AT4G05420.1 18223036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400000871 Potato cytosol 98.14 98.14
Solyc07g041080.2.1 Tomato cytosol, nucleus 83.9 83.9
VIT_11s0016g01730.t01 Wine grape cytosol 70.9 71.34
AT4G29830.1 Thale cress cytosol 69.66 70.09
CDX68590 Canola cytosol 69.35 69.78
Bra011139.1-P Field mustard cytosol 69.04 69.47
CDY43529 Canola cytosol 69.04 69.47
KRH02663 Soybean cytosol, nucleus 69.04 69.47
CDY03567 Canola cytosol 68.42 68.85
CDY14200 Canola cytosol 68.11 68.54
KRH19247 Soybean cytosol, endoplasmic reticulum 68.11 68.54
GSMUA_Achr2P01810_001 Banana cytosol 67.49 67.91
Os11t0660300-01 Rice cytosol 62.54 62.54
Zm00001d048691_P001 Maize cytosol, extracellular, mitochondrion 56.97 61.95
EES08930 Sorghum cytosol 60.99 61.18
TraesCS4D01G145700.1 Wheat cytosol 60.37 60.56
TraesCS4B01G144300.1 Wheat cytosol 59.75 59.94
TraesCS4A01G165700.1 Wheat cytosol, nucleus 59.75 59.94
HORVU4Hr1G033170.1 Barley cytosol 59.75 56.43
Solyc12g049100.1.1 Tomato cytosol 20.74 18.98
Solyc09g074400.2.1 Tomato cytosol 20.12 18.52
Solyc09g009410.2.1 Tomato cytosol, nucleus 16.72 15.52
Solyc05g014420.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 17.03 14.86
Solyc05g014460.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 17.96 13.84
Solyc12g088620.1.1 Tomato cytosol 21.67 13.41
Solyc12g088630.1.1 Tomato cytosol 21.05 13.31
Solyc12g088540.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 20.43 13.23
Solyc12g088570.1.1 Tomato cytosol 14.24 12.64
Solyc04g078320.2.1 Tomato cytosol 22.29 12.16
Solyc04g016510.2.1 Tomato nucleus 18.27 12.09
Solyc06g065700.2.1 Tomato nucleus 23.84 11.24
Solyc03g097160.2.1 Tomato nucleus 20.74 7.69
Solyc10g039190.1.1 Tomato nucleus 22.29 7.58
Protein Annotations
MapMan:15.3.6.1.6MapMan:16.8.1.2.6.3Gene3D:2.130.10.10InterPro:G-protein_beta_WD-40_repGO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986UniProt:K4DBZ1PFAM:PF00400
PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR44090SMART:SM00320
SUPFAM:SSF50978EnsemblPlantsGene:Solyc12g009030.1EnsemblPlants:Solyc12g009030.1.1UniParc:UPI00027696E3InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg::
Description
No Description!
Coordinates
chr12:+:2329781..2333073
Molecular Weight (calculated)
34819.7 Da
IEP (calculated)
5.753
GRAVY (calculated)
-0.056
Length
323 amino acids
Sequence
(BLAST)
001: MKLASLDSVT NAHDDSIWSA AWVRSTEEYP ALLLTGGLDE TVRLWDPSNF ACVQTFTGHC LGVVSVATHP TRRIAASASI DSFIRVFEVD TNNTIATLEA
101: PPSEVWQLQF SPSGSNLAAA GGGSSSVKVW DTNRWELVTT MSIPRQGAPQ PSDKSTNKKF VLSVAWSPDG SLLACGSVDG TISVFDVARA KFLHFLDGHT
201: MPVRSLVFSP SLHDSRILFS ASDDGHVHMY DAEGKTLLTS LSGHASWVLS VDISPDGAAI ATGSSDKTVR LWDLKMRAAT QTLTNHTDQV WAVAFGPTSR
301: TDVRSCMLAS VSDDKSLSFY QYS
Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.