Factsheet for Solyc12g088570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.26	62.93
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.09	61.08
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.78	60.62
Solyc12g088620.1.1	Tomato	cytosol	78.02	54.41
Solyc12g049100.1.1	Tomato	cytosol	46.7	48.16
Solyc12g088630.1.1	Tomato	cytosol	62.64	44.62
GSMUA_Achr6P34780_001	Banana	cytosol	54.4	42.22
Solyc04g078320.2.1	Tomato	cytosol	65.38	40.2
Os07t0405100-01	Rice	cytosol	57.69	37.84
Zm00001d025048_P003	Maize	cytosol	57.97	37.61
TraesCS2B01G255700.1	Wheat	nucleus	57.14	37.28
TraesCS2D01G235100.1	Wheat	nucleus	56.87	37.23
TraesCS2A01G227200.3	Wheat	cytosol	57.14	37.21
KRH61363	Soybean	nucleus	57.69	36.97
HORVU2Hr1G053480.9	Barley	mitochondrion	56.04	36.43
EES11818	Sorghum	nucleus, plastid	57.97	35.05
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	56.59	34.45
KRH52050	Soybean	cytosol, nucleus, peroxisome	57.42	32.71
Solyc09g074400.2.1	Tomato	cytosol	18.41	19.09
Solyc09g009410.2.1	Tomato	cytosol, nucleus	14.29	14.94
Solyc12g009030.1.1	Tomato	cytosol, nucleus	12.64	14.24
Solyc07g041080.2.1	Tomato	cytosol, nucleus	12.64	14.24
GSMUA_Achr6P34790_001	Banana	extracellular	5.22	12.18
Solyc04g016510.2.1	Tomato	nucleus	15.66	11.68
Solyc06g065700.2.1	Tomato	nucleus	15.93	8.47
Solyc10g039190.1.1	Tomato	nucleus	16.48	6.32
Solyc03g097160.2.1	Tomato	nucleus	14.84	6.2

Protein Annotations

MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	GO:GO:0000118	GO:GO:0003674	GO:GO:0003714
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	GO:GO:1903507
InterPro:IPR001680	InterPro:IPR007110	InterPro:IPR015943	InterPro:IPR017986	InterPro:Ig-like_dom	UniProt:K4DGS8
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50835	PANTHER:PTHR22846
PANTHER:PTHR22846:SF2	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc12g088570.1	EnsemblPlants:Solyc12g088570.1.1	UniParc:UPI0002769449
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr12:-:63875711..63877713

Molecular Weight (calculated)

40530.8 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.514

Length

364 amino acids

Sequence
(BLAST)

001: MFSGFTHAAF NFGYEAGINT STIDGMQDDT DMDEDFKLLE PMDLITKSVD ELRKIIKEKN EKAQKKKLRG KGKANADHKR EPTRRTEMEK QHKEKEREHD
101: SEMSDVMVLE GHTSEVFACA WSPEGSLLAS GSGDATARIW TIGDGPFNST IPNVLVLNHL DSQVTEENKD VTSLDWIREG TLLATCSYDG LARIWKRSGE
201: LVSTLNKHKG PIMSLKWNKK GNYLLSGSID TTVVAWNVKY GESKQQFGFH SGQLLDVSWR NNDSFTTSSA DSMIYVCKVG ENKPVKKFPG HLKGLFTLPL
301: QNEIDTINWD PSGSLLASCS DDTTVKGIYT IKWSPTGAGT SNPNNFAIYS YLILVVDRRI AGIS

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.