Factsheet for Bra004625.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79933	Canola	nucleus	85.69	97.67
CDY23845	Canola	nucleus	85.69	97.44
Bra016929.1-P	Field mustard	nucleus, plastid	89.98	80.73
AT2G05720.1	Thale cress	cytosol	45.19	80.07
GSMUA_Achr11P...	Banana	nucleus	61.15	68.42
Solyc04g016510.2.1	Tomato	nucleus	65.24	65.37
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	62.17	60.32
EER94850	Sorghum	plastid	63.6	59.81
Os03t0355400-00	Rice	cytosol, nucleus, plastid	63.8	59.54
Os03t0355200-00	Rice	cytosol, nucleus, plastid	63.8	59.54
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	61.96	59.53
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	61.96	59.53
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	61.76	59.33
KRH31616	Soybean	nucleus	68.51	58.77
KRH72083	Soybean	nucleus	68.3	58.6
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	61.35	58.48
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	67.69	56.78
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	63.6	56.44
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.15	55.17
TraesCS2A01G175200.1	Wheat	plastid	60.74	53.71
VIT_08s0007g05930.t01	Wine grape	nucleus	69.53	51.59
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	18.4	50.0
HORVU2Hr1G032990.1	Barley	cytosol	38.45	48.33
OQU89577	Sorghum	plastid	18.81	43.19
OQU91217	Sorghum	plastid	21.27	42.28
Bra011139.1-P	Field mustard	cytosol	14.52	22.12
Bra007771.1-P	Field mustard	cytosol	13.91	19.65
Bra037118.1-P	Field mustard	cytosol	19.43	15.52
Bra036534.1-P	Field mustard	nucleus	20.25	14.82
Bra020485.1-P	Field mustard	nucleus	19.63	14.41
Bra010317.1-P	Field mustard	cytosol	5.32	11.66
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	12.88	9.95
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.16	9.1
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	15.95	8.99
Bra039543.1-P	Field mustard	nucleus	17.18	8.9

Protein Annotations

MapMan:16.4.1.3.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra004625	EnsemblPlants:Bra004625.1	EnsemblPlants:Bra004625.1-P	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:IPR036285	UniProt:M4CK91	PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320
InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846
InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF50978	UniParc:UPI0002547697
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT2G41500 (E=1e-209) LIS, EMB2776 | EMB2776; nucleotide binding

Coordinates

chrA05:-:1115292..1117028

Molecular Weight (calculated)

55114.2 Da

IEP (calculated)

6.374

GRAVY (calculated)

-0.524

Length

489 amino acids

Sequence
(BLAST)

001: MVRHPPLARP RAFRPPQNGG AKADDERYVI SEESRQVRER QERAMQELLR KRRAAAMAVP TNDKSVRGRL RRLGDAITLF GEREMERRAR LAQLMARLDI
101: GGELDRLLRA YEEEVEDEEE EEVQYLFFTE GPKELREARI DIAKYSIKRA ALRVQRAKRR RDDPDEDVDA ETEWALKQAK GMVLDCSSFG DDRPLTGCSF
201: SRDGTILATC SLSGVTNLWE MPQVTNKIAV LKDHKERVTD VVFSPVDDCL ATASADRTAK LWKTDGTLLQ TFEGHLDRLA RVAFHPSGKY LGTTSFDKTW
301: RLWDVNTGAE LLLQEGHSRS VYGIAFQQEG ALAASSGLDS LARVWDLRTG RSILAFQGHI KPVLSVNFSP NGYHLASGGE DSQCRIWDLR MRKSLYIIPA
401: HANLVSQVKY EPQEGYFLAT ASYDMKVNIW SGRDFSLVKS LAGHESKVAS LDITADSSCI ATVSHDRTIK LWTNNSNEEE GGETMDIDL

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.