Factsheet for VIT_03s0038g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05780.t01
VIT_05s0077g01180.t01
VIT_07s0005g01230.t01
VIT_09s0002g01420.t01
VIT_12s0028g03940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45600.1	VIT_07s0005g01230.t01	AT1G02680.1	17340043
AT5G45600.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT5G45600.1	VIT_12s0028g03940.t01	AT1G32750.1	17340043
AT5G45600.1	VIT_04s0008g05780.t01	AT5G25150.1	17340043
AT5G45600.1	VIT_05s0077g01180.t01	AT5G49400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24348	Soybean	nucleus	78.39	78.39
PGSC0003DMT400012607	Potato	nucleus	73.99	73.72
Solyc04g077290.1.1	Tomato	nucleus	73.99	73.72
Bra025069.1-P	Field mustard	nucleus	69.23	72.41
CDY39435	Canola	nucleus	69.23	72.41
AT5G45600.1	Thale cress	nucleus	70.33	71.64
CDY38963	Canola	nucleus	69.96	71.54
VIT_04s0023g03240.t01	Wine grape	nucleus	71.43	71.43

Protein Annotations

EntrezGene:100247042	wikigene:100247042	MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	ProteinID:CCB60690
ProteinID:CCB60690.1	ncoils:Coil	UniProt:F6I174	EMBL:FN596508	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0035267	GO:GO:0043981	GO:GO:0048510	GO:GO:0090239	GO:GO:2000028	InterPro:IPR005033
InterPro:IPR038704	EntrezGene:LOC100247042	wikigene:LOC100247042	PFAM:PF03366	PFscan:PS51037	PANTHER:PTHR23195
PANTHER:PTHR23195:SF39	TIGR:TC65986	UniParc:UPI00015C8BCA	ArrayExpress:VIT_03s0038g00960	EnsemblPlantsGene:VIT_03s0038g00960	EnsemblPlants:VIT_03s0038g00960.t01
RefSeq:XP_002275472	RefSeq:XP_002275472.1	InterPro:YEAST_sf	InterPro:YEATS	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:755323..760266

Molecular Weight (calculated)

30941.7 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.591

Length

273 amino acids

Sequence
(BLAST)

001: MHSLSTKKHG PDQPDIVGPT PKSQRSKMVK STEDGEKKNL NKRLKDVEIS VPIVYGNIAF WLGKKASEYQ SHKWTVYVRS PTNEDLGVVI KRAVFQLHSS
101: FNNPTRVVES PPFELSEAGW GEFEIAITLY FQSDVCDKPL NLYHHLKLYP EDESGPMSAK KPVVVESYDE IVFSEPSEGF FARVQNHPAV IVPRLPAGFS
201: LPPPVPLEDV NEKKRFDSKD NPLNQWFKNF SEADELLQLA AARQQVQAHI AKLRRQISVI DGQHQQLKPT SDQ

Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.