Factsheet for AT5G45600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38963	Canola	nucleus	93.28	93.63
Bra025069.1-P	Field mustard	nucleus	90.67	93.1
CDY39435	Canola	nucleus	90.67	93.1
KRH24348	Soybean	nucleus	76.49	75.09
VIT_03s0038g00960.t01	Wine grape	cytosol, nucleus, peroxisome	71.64	70.33
Solyc04g077290.1.1	Tomato	nucleus	71.27	69.71
PGSC0003DMT400012607	Potato	nucleus	70.9	69.34
AT2G18000.2	Thale cress	cytosol	49.63	49.63

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	EntrezGene:834599	ProteinID:AED95273.1	ProteinID:AED95274.1
ArrayExpress:AT5G45600	EnsemblPlantsGene:AT5G45600	RefSeq:AT5G45600	TAIR:AT5G45600	RefSeq:AT5G45600-TAIR-G	EnsemblPlants:AT5G45600.1
TAIR:AT5G45600.1	EMBL:AY072123	EMBL:AY096486	EMBL:AY463617	Unigene:At.30004	ProteinID:BAB11199.1
ncoils:Coil	Symbol:GAS41	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0006950	GO:GO:0006974	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0019538	GO:GO:0030154	GO:GO:0035267	GO:GO:0043981
GO:GO:0048510	GO:GO:0090239	GO:GO:2000028	InterPro:IPR005033	InterPro:IPR038704	RefSeq:NP_001190475.1
RefSeq:NP_199373.1	PFAM:PF03366	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniProt:Q9FH40
UniParc:UPI00000A95D1	InterPro:YEAST_sf	InterPro:YEATS	SEG:seg	:	:

Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]

Coordinates

chr5:+:18487798..18489869

Molecular Weight (calculated)

30233.9 Da

IEP (calculated)

7.034

GRAVY (calculated)

-0.576

Length

268 amino acids

Sequence
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.