Factsheet for VIT_04s0023g03240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	65.57	73.97
VIT_03s0038g00960.t01	Wine grape	cytosol, nucleus, peroxisome	71.43	71.43
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	65.2	70.63
Zm00001d011122_P001	Maize	cytosol	63.37	70.61
Solyc02g084000.2.1	Tomato	nucleus	64.47	65.67
KXG19241	Sorghum	nucleus	58.97	65.45
KRH66164	Soybean	extracellular, mitochondrion	27.47	58.59
Os06t0137300-01	Rice	nucleus	67.03	57.91
TraesCS7A01G076700.1	Wheat	nucleus, plastid	63.74	56.31
TraesCS4A01G375100.1	Wheat	nucleus, plastid	63.0	56.03
TraesCS7D01G072400.2	Wheat	nucleus	63.37	55.27
KRH55119	Soybean	extracellular	29.3	51.95

Protein Annotations

EntrezGene:100257470	wikigene:100257470	MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	ProteinID:CBI17388
ProteinID:CBI17388.3	UniProt:D7SP09	EMBL:FN594959	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035267
GO:GO:0043981	GO:GO:0048510	GO:GO:2000028	InterPro:IPR005033	InterPro:IPR038704	EntrezGene:LOC100257470
wikigene:LOC100257470	PFAM:PF03366	PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	TIGR:TC58334
UniParc:UPI00015CB552	ArrayExpress:VIT_04s0023g03240	EnsemblPlantsGene:VIT_04s0023g03240	EnsemblPlants:VIT_04s0023g03240.t01	unigene:Vvi.616	RefSeq:XP_002269156
RefSeq:XP_002269156.2	InterPro:YEAST_sf	InterPro:YEATS	:	:	:

Description

No Description!

Coordinates

chr4:-:19792686..19795220

Molecular Weight (calculated)

30953.9 Da

IEP (calculated)

7.325

GRAVY (calculated)

-0.479

Length

273 amino acids

Sequence
(BLAST)

001: MPHTPSLSSP RNQSDVSESA IKLQRLVMGR STDDPEKKIP NRRLKDVEIC VPISYGTISF WLGRKASESQ SHKWTVYVRG ATNEDLGVVI RRAVFQLHPS
101: FNNPMRVVDS PPFELSESGW GEFEIAITLY FHSDVCDKQL DLFHHLKLYP EDESGPQSTK KPVVVESYNE IVFPDPLDSF FARVKDHPAV IVPRLPASFN
201: LPAPVPIENA KEKKRGDTKD HPLNQWFVNF SEADELLKLA TARQQVQAHI VKLRRQLSVI DGLPRPLKPA SDE

Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.