Factsheet for Zm00001d011122_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19241	Sorghum	nucleus	84.9	84.55
GSMUA_Achr11P...	Banana	mitochondrion	77.55	78.51
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	78.37	76.19
Os06t0137300-01	Rice	nucleus	90.2	69.94
TraesCS7A01G076700.1	Wheat	nucleus, plastid	87.35	69.26
TraesCS4A01G375100.1	Wheat	nucleus, plastid	86.53	69.06
TraesCS7D01G072400.2	Wheat	nucleus	84.08	65.81
KRH28792	Soybean	nucleus	72.24	63.44
KRH76662	Soybean	nucleus	72.24	63.44
VIT_04s0023g03240.t01	Wine grape	nucleus	70.61	63.37
KRH66164	Soybean	extracellular, mitochondrion	31.02	59.38
Solyc02g084000.2.1	Tomato	nucleus	64.9	59.33
KRH55119	Soybean	extracellular	32.65	51.95

Protein Annotations

EntrezGene:100273936	MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	ProteinID:AQK95802.1	UniProt:B4FY75
EMBL:BT042063	EMBL:EU962736	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR005033	InterPro:IPR038704	PFAM:PF03366
PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniParc:UPI00017B7731	InterPro:YEAST_sf	InterPro:YEATS
EnsemblPlantsGene:Zm00001d011122	EnsemblPlants:Zm00001d011122_P001	EnsemblPlants:Zm00001d011122_T001	SEG:seg	:	:

Description

Transcription initiation factor TFIID subunit 14b

Coordinates

chr8:-:139568855..139571751

Molecular Weight (calculated)

28116.6 Da

IEP (calculated)

7.295

GRAVY (calculated)

-0.463

Length

245 amino acids

Sequence
(BLAST)

001: MSTQNKRLKD VEVSFPIVYG TISFWLGKKA SEYNSHKWTV YVRSANNEDL SVIVKRAVFQ LHPSFQNPTR VVEQPPFELS ESGWGEFEIA ITLYFHSDVC
101: DKRLDLFHQL KLYPEEEAGP QSTKKPVVVE TYDEIVFPEP TEAFFLRVQN HPAANVPRLP PGITLPPPGP MEIVPYEKKR GDTKDHPLSQ WFSNFSEADE
201: LLKLAAARQQ VQVHIAKLRR QLTMIEGMPQ QSKAFSVPGQ QFRHI

Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.