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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plastid 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d011122_P001 Maize cytosol 69.94 90.2
TraesCS7A01G076700.1 Wheat nucleus, plastid 81.01 82.85
TraesCS4A01G375100.1 Wheat nucleus, plastid 80.38 82.74
KXG19241 Sorghum nucleus 62.66 80.49
GSMUA_Achr5P21340_001 Banana cytosol, nucleus, plastid 62.97 78.97
GSMUA_Achr11P... Banana mitochondrion 60.44 78.93
TraesCS7D01G072400.2 Wheat nucleus 76.9 77.64
KRH28792 Soybean nucleus 60.44 68.46
KRH76662 Soybean nucleus 60.44 68.46
VIT_04s0023g03240.t01 Wine grape nucleus 57.91 67.03
Solyc02g084000.2.1 Tomato nucleus 54.75 64.55
KRH66164 Soybean extracellular, mitochondrion 23.73 58.59
KRH55119 Soybean extracellular 24.68 50.65
Protein Annotations
MapMan:12.4.6.2MapMan:15.3.5.3.14Gene3D:2.60.40.1970EntrezGene:4340047ProteinID:BAD68469.1ProteinID:BAD68649.1
ProteinID:BAF18646.1ProteinID:BAS96044.1ncoils:CoilGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987InterPro:IPR005033InterPro:IPR038704EnsemblPlantsGene:Os06g0137300EnsemblPlants:Os06t0137300-01PFAM:PF03366
PFscan:PS51037PANTHER:PTHR23195PANTHER:PTHR23195:SF39UniProt:Q5VPH6UniParc:UPI0000457E95RefSeq:XP_015641573.1
InterPro:YEAST_sfInterPro:YEATSSEG:seg:::
Description
YEATS family protein. (Os06t0137300-01)
Coordinates
chr6:+:1990029..1993641
Molecular Weight (calculated)
34918.3 Da
IEP (calculated)
6.611
GRAVY (calculated)
-0.567
Length
316 amino acids
Sequence
(BLAST)
001: MPQASSSSSP ATAAAPPPPQ PAADPSPSAV PASEEALDPQ TPAPPPQAQP EAVLTAAQKA LRSKPTRPPE DSDKKNKKLK DVEISFPIVY GTISFWLGKK
101: ASEYNSHKWT VYVRSATNED LSVIVKRVVF QLHPSFTNPT RVVEQPPFEL SESGWGEFEI AITLYFHSDV CEKRLDLFHQ LKLYPEEDTG PQSTKKPVVV
201: ETYDEIVFPE PTEAFFQRVQ NHPAATVPRL PPGITLPPPG PMELVPHEKK RGDTKDHPLS QWFSNFSEAD ELLKLAAARQ QVQAHIAKLR RQLSMIDGMP
301: QQSKAVSVQG QQFGHG
Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)
001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL
Arabidopsis Description
TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.