Factsheet for Bra023525.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008690.1-P	Field mustard	nucleus	61.01	63.54
AT5G15570.1	Thale cress	nucleus	63.66	62.99
Bra039159.1-P	Field mustard	nucleus	50.13	50.13
Bra001033.1-P	Field mustard	cytosol	46.68	46.56
VIT_14s0068g00340.t01	Wine grape	nucleus	34.48	34.48
Os12t0574800-02	Rice	nucleus	29.97	30.87
GSMUA_Achr11P...	Banana	nucleus	29.44	30.75
KRH01313	Soybean	cytosol	31.03	30.71
KRH45059	Soybean	cytosol	29.44	29.13
GSMUA_Achr9P26740_001	Banana	nucleus	24.93	28.75
TraesCS5A01G081700.1	Wheat	cytosol	27.59	28.73
TraesCS5B01G084700.1	Wheat	cytosol	27.59	28.73
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	27.32	28.61
EES15849	Sorghum	cytosol	28.38	28.46
Zm00001d041530_P001	Maize	cytosol	26.79	28.29
EES17247	Sorghum	cytosol	27.32	27.99
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	25.46	27.43
Zm00001d041766_P001	Maize	cytosol	26.79	27.3
TraesCS7D01G036000.1	Wheat	mitochondrion	24.14	26.76
GSMUA_Achr9P09310_001	Banana	nucleus	22.81	25.83
Os03t0603300-01	Rice	cytosol, plastid	18.83	25.45
TraesCSU01G065200.1	Wheat	cytosol	23.61	25.07
Bra011521.1-P	Field mustard	nucleus	22.55	24.57
Bra023170.1-P	Field mustard	nucleus	17.51	23.83
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	24.67	23.66

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	EnsemblPlantsGene:Bra023525	EnsemblPlants:Bra023525.1	EnsemblPlants:Bra023525.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
UniProt:M4E422	PFAM:PF07524	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	InterPro:TAF8
UniParc:UPI0002543656	SEG:seg	:	:	:	:

Description

AT5G15570 (E=1e-141) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G02160.1); Has 143 Blast hits to 143 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

Coordinates

chrA02:+:3780322..3781455

Molecular Weight (calculated)

41616.7 Da

IEP (calculated)

4.722

GRAVY (calculated)

-0.616

Length

377 amino acids

Sequence
(BLAST)

001: MTNGGGGEGG GSGKGNLFRG NDFAYALARM AVAQICEGVE ITSYQESHAR EGARFSSFHE TALETLTEVV IQYIQSVGKT TQFYANMAGR VEGNALDIVQ
101: ALEDLGSGLG FSGAPDVERC LAESGVVKDI IRYTAEAEEV PFVYSLPRFP FNRGKRPAPS FAEVGAELPD EHIPVWLPAF PQTKVSNELE EDTSVEKIQG
201: EVQSNENGSS LPRLQQSVEV DRLKVQKSMD QKEVEKPSEE QPECNPFLAA PVWVGEKNVP RVFRPSLLTN EEVSAGHVPE KQTNKSHHMP PLEAFAPSGI
301: IKDKSRLGET EGGERNDDGR TQRALLRFKI GTRKAAPVRW TRKESLEEKG WFLEDGDKRE KNVELEEEPV TIDTNVK

Best Arabidopsis Sequence Match ( AT5G15570.1 )
(BLAST)

001: MINGGGEGGS QRRELQGKRS MSRGNDFAYA LARMATAQIC ESVEINSYQE SSQSREGLRF SSFQETALET LTDVVIQYIQ NIGKTAQFYV NMAGRVESNA
101: LDIVQALEDL GSGLGFDGAH DVEHCLADSG VVKDIIRYTG EAEEIPFVYS LPRFPFNRGK RPAPSFSDIG VEPPDEHIPV WLPAFPETKM SNGSEEINVD
201: KIERDVQSRD NGSSLMSVQQ SVDVDRLKVQ KSMDQKDVQK PIEEPEGNPF LAAPIWVGEK NVSLSRVVCP SELRKEEIST NHLPEKHMSM SHHIPALEAY
301: ALSDKINDKN RLAGMEDEQK RDGARTQGAL LRFKIGTRKA SECWKINQCL EEKGWFKEDG NKREKKVERE EKSESIDADV K

Arabidopsis Description

Bromodomain transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LF25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.