Factsheet for Solyc07g056480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037996	Potato	cytosol	91.82	91.82
Solyc07g056430.2.1	Tomato	cytosol	54.55	85.71
Solyc07g056470.2.1	Tomato	plastid	85.0	85.0
Solyc07g056420.2.1	Tomato	extracellular	84.09	84.09
Solyc07g056460.2.1	Tomato	plastid	84.09	84.09
Solyc07g056440.2.1	Tomato	cytosol	84.09	83.33
Solyc07g056450.2.1	Tomato	cytosol	51.82	82.01
Solyc07g056490.2.1	Tomato	extracellular	69.09	69.41
Solyc10g007640.2.1	Tomato	cytosol	69.09	68.78
Solyc12g011310.1.1	Tomato	plastid	66.36	66.67
Solyc12g011300.1.1	Tomato	cytosol	65.91	65.91
Solyc07g056510.2.1	Tomato	cytosol	65.0	65.3
Solyc10g007620.1.1	Tomato	cytosol	59.09	59.36
Solyc02g081240.1.1	Tomato	cytosol	53.64	53.15
Solyc12g011320.1.1	Tomato	cytosol	52.27	52.51
Solyc05g006740.2.1	Tomato	cytosol	39.09	40.19
Solyc05g026220.1.1	Tomato	cytosol	29.09	40.0
Solyc05g006730.2.1	Tomato	mitochondrion	40.45	39.56
Solyc05g006750.2.1	Tomato	cytosol	39.09	37.55
Solyc05g026210.1.1	Tomato	nucleus	35.91	34.35

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0004601	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407
GO:GO:0009987	GO:GO:0016740	GO:GO:0019748	GO:GO:0098869	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	UniProt:K4CGI1	PFAM:PF02798	PFAM:PF13410
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc07g056480.2	EnsemblPlants:Solyc07g056480.2.1	InterPro:Thioredoxin-like_sf	UniParc:UPI000276B25D	:	:

Description

No Description!

Coordinates

chr7:+:64299666..64300689

Molecular Weight (calculated)

25587.8 Da

IEP (calculated)

5.458

GRAVY (calculated)

-0.342

Length

220 amino acids

Sequence
(BLAST)

001: MANDEVILLD FWPSMFGMRL RIALAEKEIK YEYRDEDLRN KSPLLLQMNP IHKKIPVLIH NGKPICESII GVEYIDEVWK DKAPFLPSDP YERAQARFWA
101: DYIDKKLYDS GRKLWTTKGE EQETAKKDFI ECLKVLEGAL GEKPYFGGDN FGCVDIALIG YYSWFYAYES YANISVEAEC PKFVAWAKNC MLRDSVAKSL
201: PDQHKVCEFV KVLRQKFGIE

Best Arabidopsis Sequence Match ( AT1G78380.1 )
(BLAST)

001: MANEVILLDF WPSMFGMRTR IALREKGVEF EYREEDLRNK SPLLLQMNPI HKKIPVLIHN GKPVNESIIQ VQYIDEVWSH KNPILPSDPY LRAQARFWAD
101: FIDKKLYDAQ RKVWATKGEE QEAGKKDFIE ILKTLESELG DKPYFSGDDF GYVDIALIGF YTWFPAYEKF ANFSIESEVP KLIAWVKKCL QRESVAKSLP
201: DPEKVTEFVS ELRKKFVPE

Arabidopsis Description

GSTU19GSTU19 [Source:UniProtKB/TrEMBL;Acc:A0A178W4K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.