Factsheet for Solyc07g056420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 5
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
extracellular: 22892874
plastid: 26371478

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079839	Potato	cytosol	90.91	90.91
PGSC0003DMT400079840	Potato	cytosol	82.27	87.86
Solyc07g056450.2.1	Tomato	cytosol	53.18	84.17
Solyc07g056480.2.1	Tomato	cytosol, plastid	84.09	84.09
Solyc07g056430.2.1	Tomato	cytosol	53.18	83.57
Solyc07g056470.2.1	Tomato	plastid	80.91	80.91
Solyc07g056440.2.1	Tomato	cytosol	80.45	79.73
Solyc07g056460.2.1	Tomato	plastid	79.55	79.55
Solyc10g007640.2.1	Tomato	cytosol	67.73	67.42
Solyc07g056490.2.1	Tomato	extracellular	65.91	66.21
Solyc12g011300.1.1	Tomato	cytosol	63.64	63.64
Solyc12g011310.1.1	Tomato	plastid	63.18	63.47
Solyc07g056510.2.1	Tomato	cytosol	62.73	63.01
Solyc10g007620.1.1	Tomato	cytosol	55.0	55.25
Solyc12g011320.1.1	Tomato	cytosol	51.82	52.05
Solyc02g081240.1.1	Tomato	cytosol	51.82	51.35
Solyc05g006730.2.1	Tomato	mitochondrion	41.82	40.89
Solyc05g006740.2.1	Tomato	cytosol	38.64	39.72
Solyc05g006750.2.1	Tomato	cytosol	39.09	37.55
Solyc05g026220.1.1	Tomato	cytosol	27.27	37.5
Solyc05g026210.1.1	Tomato	nucleus	36.36	34.78

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987
GO:GO:0016740	GO:GO:0019748	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045
InterPro:IPR010987	UniProt:K4CGH5	PFAM:PF02798	PFAM:PF13410	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc07g056420.2	EnsemblPlants:Solyc07g056420.2.1
InterPro:Thioredoxin-like_sf	UniParc:UPI000276B072	:	:	:	:

Description

No Description!

Coordinates

chr7:+:64278679..64280483

Molecular Weight (calculated)

25394.6 Da

IEP (calculated)

5.204

GRAVY (calculated)

-0.303

Length

220 amino acids

Sequence
(BLAST)

001: MANDEVILLD FWPSMYGMRL RIALAEKEIK YEYRDEDLRN KSPLLLQMNP IHKKIPVLIH NGKPICESII GVEYIDEVWK DKAPLLPSDP YERAQARFWA
101: DYIDKKLYAT GSKIYTATGD EQEAGKKDFV EILKVLEGAL GEKPYYGGDN FGFGDIALIG FYCWFHAYEV YGNFSIEAEC PNLVAWAKRC MQRDSVAKTL
201: PDQHKIIEFV KILREKLGLE

Best Arabidopsis Sequence Match ( AT1G17180.1 )
(BLAST)

001: MADEVILLDF WPSMFGMRTR IALEEKNVKF DYREQDLWNK SPILLEMNPV HKKIPVLIHN GNPVCESLIQ IEYIDEVWPS KTPLLPSDPY QRAQAKFWGD
101: FIDKKVYASA RLIWGAKGEE HEAGKKEFIE ILKTLESELG DKTYFGGETF GYVDIALIGF YSWFEAYEKF GSFSIEAECP KLIAWGKRCV ERESVAKSLP
201: DSEKIIKFVP ELRKKLGIEI E

Arabidopsis Description

GSTU25Glutathione S-transferase U25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.