Factsheet for Solyc12g011320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020098	Potato	cytosol	93.61	80.71
Solyc07g056430.2.1	Tomato	cytosol	37.44	58.57
Solyc07g056450.2.1	Tomato	cytosol	35.62	56.12
Solyc12g011310.1.1	Tomato	plastid	55.25	55.25
Solyc07g056510.2.1	Tomato	cytosol	55.25	55.25
Solyc07g056440.2.1	Tomato	cytosol	54.79	54.05
Solyc07g056470.2.1	Tomato	plastid	53.42	53.18
Solyc07g056480.2.1	Tomato	cytosol, plastid	52.51	52.27
Solyc07g056460.2.1	Tomato	plastid	52.51	52.27
Solyc07g056420.2.1	Tomato	extracellular	52.05	51.82
Solyc07g056490.2.1	Tomato	extracellular	51.14	51.14
Solyc12g011300.1.1	Tomato	cytosol	51.14	50.91
CDY58045	Canola	cytosol	51.6	50.45
CDY25833	Canola	cytosol	51.14	50.0
Bra038140.1-P	Field mustard	cytosol	51.14	50.0
CDY25831	Canola	cytosol	50.68	49.55
Solyc10g007640.2.1	Tomato	cytosol	49.32	48.87
AT1G53680.1	Thale cress	cytosol	48.86	47.77
Solyc10g007620.1.1	Tomato	cytosol	43.38	43.38
Solyc02g081240.1.1	Tomato	cytosol	42.92	42.34
Solyc05g026220.1.1	Tomato	cytosol	26.48	36.25
Solyc05g006740.2.1	Tomato	cytosol	35.16	35.98
Solyc05g026210.1.1	Tomato	nucleus	36.07	34.35
Solyc05g006750.2.1	Tomato	cytosol	35.62	34.06
Solyc05g006730.2.1	Tomato	mitochondrion	34.7	33.78

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407
GO:GO:0009987	GO:GO:0016740	GO:GO:0019748	GO:GO:0046686	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	UniProt:K4DCL8	PFAM:PF00043
PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc12g011320.1	EnsemblPlants:Solyc12g011320.1.1	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	UniParc:UPI000276A19C

Description

No Description!

Coordinates

chr12:-:4162044..4163230

Molecular Weight (calculated)

25451.8 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.179

Length

219 amino acids

Sequence
(BLAST)

001: MTQEEEVVLL DYWASPFGTM ARIALVEKGV NFIHKFEDLS NKSPLLLEMN PVHHKIPVLV HKGKSICESN IIIQYIDEIW KNNSPLLPYE PYQRAKARFL
101: VDFINKKVHG SSVKVWMGQI EEQENGKKEL VECSKFLEEE LGDKLYFGGD VFGFVDIALV PFYNWFIVFK TFANFNTIEI QCPKLVMWGE RCLNRDSVSK
201: SLPTSNQVYQ AYLDFKKGW

Best Arabidopsis Sequence Match ( AT1G17170.1 )
(BLAST)

001: MADEVILLDF WASMFGMRTR IALAEKRVKY DHREEDLWNK SSLLLEMNPV HKKIPVLIHN GKPVCESLIQ IEYIDETWPD NNPLLPSDPY KRAHAKFWAD
101: FIDKKVNVTA RRIWAVKGEE QEAAKELIEI LKTLESELGD KKYFGDETFG YVDIALIGFH SWFAVYEKFG NVSIESECSK LVAWAKRCLE RESVAKALPE
201: SEKVITFISE RRKKLGLE

Arabidopsis Description

GSTU24Glutathione S-transferase U24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.