Factsheet for PGSC0003DMT400020098

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011320.1.1	Tomato	cytosol	80.71	93.61
PGSC0003DMT400079841	Potato	cytosol	48.43	55.91
PGSC0003DMT400071057	Potato	cytosol	47.24	54.79
PGSC0003DMT400079839	Potato	cytosol	47.24	54.55
PGSC0003DMT400037996	Potato	cytosol	46.85	54.09
PGSC0003DMT400079842	Potato	cytosol	46.85	53.6
PGSC0003DMT400037986	Potato	cytosol	43.7	53.37
PGSC0003DMT400037990	Potato	cytosol	46.06	53.18
PGSC0003DMT400071059	Potato	cytosol	45.67	52.73
PGSC0003DMT400079840	Potato	cytosol	42.52	52.43
PGSC0003DMT400037994	Potato	cytosol	45.28	52.27
PGSC0003DMT400054729	Potato	cytosol	45.28	52.04
PGSC0003DMT400020286	Potato	cytosol	41.73	51.96
PGSC0003DMT400001779	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.25	50.29
PGSC0003DMT400038054	Potato	endoplasmic reticulum	42.91	49.77
CDY58045	Canola	cytosol	43.7	49.55
CDY25833	Canola	cytosol	43.31	49.11
Bra038140.1-P	Field mustard	cytosol	43.31	49.11
CDY25831	Canola	cytosol	42.91	48.66
AT1G53680.1	Thale cress	cytosol	41.34	46.88
PGSC0003DMT400058268	Potato	cytosol	19.29	44.95
PGSC0003DMT400094585	Potato	cytosol	38.19	43.89
PGSC0003DMT400092412	Potato	cytosol	37.01	42.92
PGSC0003DMT400058271	Potato	cytosol	33.46	36.8
PGSC0003DMT400095775	Potato	cytosol	27.56	36.27
PGSC0003DMT400040670	Potato	cytosol	30.71	33.77
PGSC0003DMT400019934	Potato	cytosol	28.35	32.88
PGSC0003DMT400091065	Potato	cytosol	32.68	25.62

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:102589125	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0046686	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	UniProt:M1ACZ9	PFAM:PF00043	PFAM:PF02798
EnsemblPlantsGene:PGSC0003DMG400007786	PGSC:PGSC0003DMG400007786	EnsemblPlants:PGSC0003DMT400020098	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260
PANTHER:PTHR11260:SF493	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002969009	RefSeq:XP_006349998.1

Description

2,4-D inducible glutathione S-transferase [Source:PGSC_GENE;Acc:PGSC0003DMG400007786]

Coordinates

chr12:+:1122966..1126224

Molecular Weight (calculated)

29901.1 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.465

Length

254 amino acids

Sequence
(BLAST)

001: MTQEEEEVVL LDYWPSPFGT MARIALVEKG VNYIHKFEDL SNKSPLLLEM NPVHHKIPVL VHKGKSICES NIIIQYIDEI WKNNFPLLPC EPYQRAKARF
101: LVDFINKKVH GSSVKVWMGQ NEEQEDGKKE LVEWSKFLEE ELGDKLYFGG DEFGFVDIAF VPFYNWLIVF KTFANFNTIE IECPKLVMWG ERCLKRDSVS
201: KSLPTSDQVY QAYLEFKKGL REWKENMDYK RGRSRSSQER IHRVPKVIGR RVGR

Best Arabidopsis Sequence Match ( AT1G17180.1 )
(BLAST)

001: MADEVILLDF WPSMFGMRTR IALEEKNVKF DYREQDLWNK SPILLEMNPV HKKIPVLIHN GNPVCESLIQ IEYIDEVWPS KTPLLPSDPY QRAQAKFWGD
101: FIDKKVYASA RLIWGAKGEE HEAGKKEFIE ILKTLESELG DKTYFGGETF GYVDIALIGF YSWFEAYEKF GSFSIEAECP KLIAWGKRCV ERESVAKSLP
201: DSEKIIKFVP ELRKKLGIEI E

Arabidopsis Description

GSTU25Glutathione S-transferase U25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.