Factsheet for PGSC0003DMT400079839

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056420.2.1	Tomato	extracellular	90.91	90.91
PGSC0003DMT400079840	Potato	cytosol	85.0	90.78
PGSC0003DMT400079841	Potato	cytosol	85.45	85.45
PGSC0003DMT400037996	Potato	cytosol	83.18	83.18
PGSC0003DMT400079842	Potato	cytosol	81.36	80.63
PGSC0003DMT400037990	Potato	cytosol	80.45	80.45
PGSC0003DMT400037986	Potato	cytosol	75.45	79.81
PGSC0003DMT400037994	Potato	cytosol	78.64	78.64
PGSC0003DMT400054729	Potato	cytosol	69.09	68.78
PGSC0003DMT400071059	Potato	cytosol	65.91	65.91
PGSC0003DMT400038054	Potato	endoplasmic reticulum	65.45	65.75
PGSC0003DMT400020286	Potato	cytosol	60.0	64.71
PGSC0003DMT400071057	Potato	cytosol	62.73	63.01
PGSC0003DMT400092412	Potato	cytosol	57.73	57.99
PGSC0003DMT400001779	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.45	57.8
PGSC0003DMT400058268	Potato	cytosol	26.36	53.21
PGSC0003DMT400094585	Potato	cytosol	52.73	52.49
PGSC0003DMT400020098	Potato	cytosol	54.55	47.24
PGSC0003DMT400058271	Potato	cytosol	44.55	42.42
PGSC0003DMT400040670	Potato	cytosol	42.27	40.26
PGSC0003DMT400019934	Potato	cytosol	40.0	40.18
PGSC0003DMT400095775	Potato	cytosol	32.27	36.79
PGSC0003DMT400091065	Potato	cytosol	39.09	26.54

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:102579204	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987
UniProt:M1D2J1	PFAM:PF02798	PFAM:PF13410	EnsemblPlantsGene:PGSC0003DMG400031091	PGSC:PGSC0003DMG400031091	EnsemblPlants:PGSC0003DMT400079839
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0002962A8C	RefSeq:XP_006366776.1	SEG:seg	:	:

Description

Glutathione S-transferase [Source:PGSC_GENE;Acc:PGSC0003DMG400031091]

Coordinates

chr7:+:51617502..51619148

Molecular Weight (calculated)

25418.8 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.310

Length

220 amino acids

Sequence
(BLAST)

001: MANDEVILLD FWPSMFGMRL RIALAEKEVK YEYKEEDLRN KSPLLLQMNP IHKKIPVLIH NGKPICESLI GVEYIDEVWK DKSPLLPSDP YVRAQARFWG
101: DYIDKKLYDT ARKIYSATGD EHEAGKKDFI EILKVLEGAL GEKPYYGGDN FGFGDIALIG FYCWFPAYEI YGNFSIEAEC PKLVAWAKRC MKRDSVAKTL
201: PDQHKILEFA KILREKLGLE

Best Arabidopsis Sequence Match ( AT1G78380.1 )
(BLAST)

001: MANEVILLDF WPSMFGMRTR IALREKGVEF EYREEDLRNK SPLLLQMNPI HKKIPVLIHN GKPVNESIIQ VQYIDEVWSH KNPILPSDPY LRAQARFWAD
101: FIDKKLYDAQ RKVWATKGEE QEAGKKDFIE ILKTLESELG DKPYFSGDDF GYVDIALIGF YTWFPAYEKF ANFSIESEVP KLIAWVKKCL QRESVAKSLP
201: DPEKVTEFVS ELRKKFVPE

Arabidopsis Description

GSTU19GSTU19 [Source:UniProtKB/TrEMBL;Acc:A0A178W4K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.