Factsheet for Solyc07g056460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037994	Potato	cytosol	93.18	93.18
Solyc07g056470.2.1	Tomato	plastid	91.36	91.36
Solyc07g056430.2.1	Tomato	cytosol	53.64	84.29
Solyc07g056480.2.1	Tomato	cytosol, plastid	84.09	84.09
Solyc07g056450.2.1	Tomato	cytosol	52.27	82.73
Solyc07g056440.2.1	Tomato	cytosol	81.36	80.63
Solyc07g056420.2.1	Tomato	extracellular	79.55	79.55
Solyc07g056490.2.1	Tomato	extracellular	67.27	67.58
Solyc10g007640.2.1	Tomato	cytosol	65.45	65.16
Solyc12g011300.1.1	Tomato	cytosol	64.55	64.55
Solyc12g011310.1.1	Tomato	plastid	63.64	63.93
Solyc07g056510.2.1	Tomato	cytosol	61.82	62.1
Solyc10g007620.1.1	Tomato	cytosol	57.27	57.53
Solyc12g011320.1.1	Tomato	cytosol	52.27	52.51
Solyc02g081240.1.1	Tomato	cytosol	52.27	51.8
Solyc05g006730.2.1	Tomato	mitochondrion	40.0	39.11
Solyc05g026220.1.1	Tomato	cytosol	28.18	38.75
Solyc05g006740.2.1	Tomato	cytosol	36.82	37.85
Solyc05g006750.2.1	Tomato	cytosol	36.82	35.37
Solyc05g026210.1.1	Tomato	nucleus	35.91	34.35

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987
GO:GO:0016740	GO:GO:0019748	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045
InterPro:IPR010987	UniProt:K4CGH9	PFAM:PF02798	PFAM:PF13410	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc07g056460.2	EnsemblPlants:Solyc07g056460.2.1
InterPro:Thioredoxin-like_sf	UniParc:UPI000276B25B	:	:	:	:

Description

No Description!

Coordinates

chr7:+:64293367..64295078

Molecular Weight (calculated)

25764.1 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.315

Length

220 amino acids

Sequence
(BLAST)

001: MANDEVIVLG FWPSMFGLRL RIALAEKEVK FEYREEDLKN KSPLLLQMNP IHRKIPVLIH NGKPICESII GVEYIEEVWK DKAPLLPSDP YERTQARFWA
101: DYIDKKFYWP ARKLWTTKGE EQEIAKKDFI ECLKVLEGVL GDKPYFGGDN FGFVDIALIG FYCWFSAYET YGNFSTEAEF PKFFAWAKRC MQRDSVAKSS
201: PDQHKVLEFV KVVRQRLGIE

Best Arabidopsis Sequence Match ( AT1G78380.1 )
(BLAST)

001: MANEVILLDF WPSMFGMRTR IALREKGVEF EYREEDLRNK SPLLLQMNPI HKKIPVLIHN GKPVNESIIQ VQYIDEVWSH KNPILPSDPY LRAQARFWAD
101: FIDKKLYDAQ RKVWATKGEE QEAGKKDFIE ILKTLESELG DKPYFSGDDF GYVDIALIGF YTWFPAYEKF ANFSIESEVP KLIAWVKKCL QRESVAKSLP
201: DPEKVTEFVS ELRKKFVPE

Arabidopsis Description

GSTU19GSTU19 [Source:UniProtKB/TrEMBL;Acc:A0A178W4K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.