CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY06478
CDY23174
CDY55104
CDY57769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20950.1	CDX73678	AT3G51920.1	17360592
AT1G20950.1	CDX95314	AT3G51920.1	17360592
AT1G20950.1	CDY23174	AT3G51920.1	17360592
AT1G20950.1	CDY06478	AT4G14640.1	17360592
AT1G20950.1	CDY55104	AT5G65940.1	21798944
AT1G20950.1	CDY57769	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96611	Canola	cytosol	99.33	99.33
CDY67022	Canola	cytosol	97.32	94.02
CDY67203	Canola	cytosol	96.99	93.7
AT1G20950.1	Thale cress	cytosol	93.31	90.88
CDX87587	Canola	cytosol	91.3	88.49
CDX88295	Canola	cytosol	91.14	88.33
VIT_18s0122g00510.t01	Wine grape	cytosol	82.44	80.03
PGSC0003DMT400025919	Potato	cytosol	82.44	80.03
KRH49514	Soybean	cytosol, endoplasmic reticulum, nucleus	82.11	79.58
Solyc04g082880.2.1	Tomato	cytosol, nucleus, plastid, unclear	81.94	79.55
KRG89187	Soybean	endoplasmic reticulum	81.61	79.09
PGSC0003DMT400075360	Potato	cytosol	81.44	78.93
Solyc12g095760.1.1	Tomato	cytosol, extracellular, nucleus, unclear	81.44	78.93
EES05627	Sorghum	cytosol	77.26	75.0
TraesCS6D01G259500.1	Wheat	golgi	76.92	74.68
TraesCS6B01G307200.1	Wheat	cytosol	76.92	74.68
Os06t0326400-01	Rice	cytosol, plasma membrane, plastid	77.59	74.6
Os02t0714200-01	Rice	cytosol, plasma membrane	76.92	74.55
Zm00001d017830_P001	Maize	cytosol	76.59	74.11
OQU76351	Sorghum	cytosol	76.92	74.07
TraesCS6A01G279100.2	Wheat	cytosol	71.4	73.49
TraesCS7B01G193600.1	Wheat	cytosol	74.58	73.0
TraesCS7D01G228500.1	Wheat	cytosol	74.41	72.83
TraesCS7A01G226000.2	Wheat	cytosol	74.41	72.83
HORVU6Hr1G070270.5	Barley	cytosol	77.09	70.71
Zm00001d045919_P001	Maize	mitochondrion	55.02	69.12
Zm00001d051629_P003	Maize	cytosol	71.74	68.75
HORVU7Hr1G047000.11	Barley	cytosol	73.08	65.52
GSMUA_AchrUn_...	Banana	cytosol	13.88	61.48
TraesCS5A01G072700.2	Wheat	cytosol, golgi	63.71	61.35
Zm00001d032386_P003	Maize	cytosol	63.21	61.16
HORVU5Hr1G019030.9	Barley	cytosol	63.38	60.93
Os09t0298100-00	Rice	plastid	63.04	60.81
Os08t0345700-01	Rice	extracellular	62.71	60.78
KXG34347	Sorghum	cytosol	62.54	60.52
KXG35340	Sorghum	cytosol	62.88	59.59
Zm00001d035883_P001	Maize	mitochondrion	9.36	58.33
Zm00001d020006_P001	Maize	cytosol	52.84	58.09
OQU80257	Sorghum	cytosol	51.84	57.84
TraesCS5B01G078300.1	Wheat	golgi	63.38	57.08
TraesCS5D01G085500.2	Wheat	golgi	63.38	57.08
GSMUA_AchrUn_...	Banana	cytosol	8.7	52.0
Zm00001d004479_P001	Maize	mitochondrion	16.05	49.48
Zm00001d021503_P001	Maize	cytosol	22.74	47.22
Zm00001d008809_P001	Maize	cytosol	18.56	46.84
Zm00001d015529_P001	Maize	mitochondrion	13.88	45.86
Zm00001d043564_P001	Maize	cytosol	22.41	44.82
Zm00001d003637_P001	Maize	cytosol	4.68	44.44
Zm00001d032792_P001	Maize	cytosol	8.7	44.44
Zm00001d003638_P001	Maize	mitochondrion	9.53	40.43
Zm00001d036537_P007	Maize	cytosol	8.36	39.68
CDX94695	Canola	cytosol	5.52	37.93
CDY34604	Canola	cytosol	31.77	37.48
CDX98086	Canola	plastid	33.61	35.51
CDY30046	Canola	plastid	33.61	35.51
CDX94541	Canola	cytosol	33.95	32.02
Zm00001d037466_P002	Maize	cytosol	6.35	31.67
CDY21025	Canola	cytosol	5.02	31.58
CDY31232	Canola	cytosol, plastid	17.22	31.02
Zm00001d013450_P001	Maize	cytosol, plastid	12.21	25.09

Protein Annotations

KEGG:00010+2.7.1.11	KEGG:00030+2.7.1.11	KEGG:00051+2.7.1.11	KEGG:00052+2.7.1.11	KEGG:00680+2.7.1.11	Gene3D:1.10.10.480
MapMan:2.1.1.1.2	Gene3D:3.40.50.450	Gene3D:3.40.50.460	GO:A0A078H4Z3	UniProt:A0A078H4Z3	EnsemblPlants:CDY33660
ProteinID:CDY33660	ProteinID:CDY33660.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003872
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0046835	GO:GO:0046872	GO:GO:0047334	GO:GO:0061615	EnsemblPlantsGene:GSBRNA2T00055023001	HAMAP:MF_01980
PFAM:PF00365	PIRSF:PIRSF005677	InterPro:PKF_sf	PANTHER:PTHR43650	PANTHER:PTHR43650:SF2	MetaCyc:PWY-1042
MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-7385	InterPro:PfpB_PPi_PFK	InterPro:Phosphofructokinase_dom	SUPFAM:SSF53784
UniPathway:UPA00109	UniParc:UPI0004EECF95	SEG:seg	:	:	:

Description

BnaC08g19600DPyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A078H4Z3]

Coordinates

chrLK032319:-:286142..289932

Molecular Weight (calculated)

65326.5 Da

IEP (calculated)

6.747

GRAVY (calculated)

-0.127

Length

598 amino acids

Sequence
(BLAST)

001: MDSDFGIPRE LSPLQQLRSQ YQPELPPCLQ GTTVRVELGD GTTVSEASDS HIIARAFPHT LGQPLAHFLR ETAKVSDAHI ITQLPSIRVG IVFCGRQAPG
101: GHNVIWGLYE ALKVHNAKST LLGFLGGSEG LFAQKTLEIT DDILQTYKNQ GGYDLLGRTK DQIRTTEQVN AALKACTDLK LDGLVIIGGV TSNTDAAHLA
201: EFFAEAKCST KVVGVPVTTN GDLKNQFVEA NVGFDTICKV NSQLISNACT DALSAEKYYY FIRLMGRKHS HVALECTLQS HPNMVILGEE VAASKLTIFD
301: ISKQICDAVQ ARAGQDKNHG VILIPEGIIE SIPEVYALLK EIHGLLREET GMRLFFLLLH PESDDSAQLS QIETEKLLAY LVETEMNKRL KEGTYKGKKF
401: NAICHFFGYQ ARGSLPSKFD CDYAYVLGHI CYHILAAGLN GYMATVTNLK SPVNKWKCGA APITAMMTVK NWSQNAGSTS TSIGRPAIHP AMVDLKGKAY
501: ELLRQNAEKF LMEDLYRNPG PLQYDGPGAD AKAVSLCVED QDYMGRIKKL QEYLDQVRTI VKPGCSQDVL KAALSVMASV TDVLTTISSS SNGGQQTA

Best Arabidopsis Sequence Match ( AT1G20950.1 )
(BLAST)

001: MDSDFGIPRE LSPLQQLRSQ YKPELPPCLQ GTTVRVELGD GTTVAEAADS HTMARAFPHT LGQPLAHFLR ETAQVPDAHI ITELPSVRVG IVFCGRQAPG
101: GHNVIWGLFE ALKVHNAKST LLGFLGGSEG LFAQKTLEIT DDILQTYKNQ GGYDLLGRTK DQIKTTEQVN AALKACTDLK LDGLVIIGGV ISNTDAAHLA
201: EFFAAAKCST KVVGVPVTTN GDLKNQFVEA NVGFDTICKV NSQLISNACT DALSAEKYYY FIRLMGRKHS HVALECTLQS HPNMVILGEE VAASKLTIFD
301: IAKQICDAVQ ARAVEDKNHG VILIPEGLIV SIPEVYALLK EIHGLLRQGV SADKISTQLS PWSSALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA
401: YLVETEMNKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH ICYHILAAGL NGYMATVTNL KSPVNKWKCG ATPITAMMTV KHWSQDASYT
501: LTSIGRPAIH PAMVDLKGKA YDLLRQNAQK FLMEDLYRNP GPLQYDGPGA DAKAVSLCVE DQDYMGRIKK LQEYLDQVRT IVKPGCSQDV LKAALSVMAS
601: VTDVLTTISS NGGQ

Arabidopsis Description

PFP-ALPHA1Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178WMV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.