CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH07311
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20950.1	KRG89812	AT2G41100.1	17360592
AT1G20950.1	KRG94975	AT2G41100.1	17360592
AT1G20950.1	KRH18664	AT2G41100.1	17360592
AT1G20950.1	KRH31638	AT4G14640.1	17360592
AT1G20950.1	KRH69070	AT4G14640.1	17360592
AT1G20950.1	KRH07311	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89187	Soybean	endoplasmic reticulum	97.73	97.73
VIT_18s0122g00510.t01	Wine grape	cytosol	85.9	86.04
Solyc12g095760.1.1	Tomato	cytosol, extracellular, nucleus, unclear	84.77	84.77
PGSC0003DMT400075360	Potato	cytosol	84.6	84.6
Solyc04g082880.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.47	83.6
PGSC0003DMT400025919	Potato	cytosol	83.31	83.44
AT1G20950.1	Thale cress	cytosol	82.66	83.06
Bra025858.1-P	Field mustard	cytosol	83.14	82.88
CDY67022	Canola	cytosol	83.14	82.88
CDY67203	Canola	cytosol	83.14	82.88
CDX88295	Canola	cytosol	82.17	82.17
CDY33660	Canola	cytosol	79.58	82.11
CDX96611	Canola	cytosol	79.42	81.94
Bra015734.1-P	Field mustard	cytosol	81.85	81.85
CDX87587	Canola	cytosol	81.85	81.85
AT1G76550.1	Thale cress	cytosol	81.36	81.36
Os02t0714200-01	Rice	cytosol, plasma membrane	81.36	81.36
TraesCS6D01G259500.1	Wheat	golgi	80.23	80.36
TraesCS6B01G307200.1	Wheat	cytosol	80.06	80.19
EES05627	Sorghum	cytosol	79.9	80.03
Zm00001d017830_P001	Maize	cytosol	79.74	79.61
TraesCS6A01G279100.2	Wheat	cytosol	74.88	79.52
Os06t0326400-01	Rice	cytosol, plasma membrane, plastid	79.58	78.94
OQU76351	Sorghum	cytosol	78.77	78.26
TraesCS7A01G226000.2	Wheat	cytosol	76.17	76.92
TraesCS7D01G228500.1	Wheat	cytosol	76.17	76.92
TraesCS7B01G193600.1	Wheat	cytosol	75.53	76.27
HORVU6Hr1G070270.5	Barley	cytosol	80.39	76.07
Zm00001d051629_P003	Maize	cytosol	74.55	73.72
Zm00001d045919_P001	Maize	mitochondrion	56.4	73.11
HORVU7Hr1G047000.11	Barley	cytosol	75.2	69.57
Os09t0298100-00	Rice	plastid	68.07	67.74
HORVU5Hr1G019030.9	Barley	cytosol	68.23	67.68
TraesCS5A01G072700.2	Wheat	cytosol, golgi	67.91	67.47
Os08t0345700-01	Rice	extracellular	67.42	67.42
Zm00001d032386_P003	Maize	cytosol	67.42	67.31
KXG34347	Sorghum	cytosol	67.1	66.99
KXG35340	Sorghum	cytosol	67.1	65.61
GSMUA_AchrUn_...	Banana	cytosol	13.94	63.7
OQU80257	Sorghum	cytosol	55.27	63.62
Zm00001d020006_P001	Maize	cytosol	55.59	63.05
TraesCS5D01G085500.2	Wheat	golgi	67.75	62.95
TraesCS5B01G078300.1	Wheat	golgi	67.59	62.8
Zm00001d035883_P001	Maize	mitochondrion	8.43	54.17
Zm00001d004479_P001	Maize	mitochondrion	16.21	51.55
GSMUA_AchrUn_...	Banana	cytosol	8.27	51.0
Zm00001d021503_P001	Maize	cytosol	22.85	48.96
Zm00001d008809_P001	Maize	cytosol	18.64	48.52
Zm00001d043564_P001	Maize	cytosol	22.53	46.49
Zm00001d015529_P001	Maize	mitochondrion	13.61	46.41
Zm00001d032792_P001	Maize	cytosol	8.75	46.15
Zm00001d003637_P001	Maize	cytosol	4.7	46.03
KRH33517	Soybean	cytosol	6.65	40.59
KRH71798	Soybean	cytosol	6.97	40.19
Zm00001d003638_P001	Maize	mitochondrion	8.91	39.01
Zm00001d036537_P007	Maize	cytosol	7.94	38.89
KRH36515	Soybean	endoplasmic reticulum, mitochondrion	34.36	37.72
KRH11497	Soybean	nucleus	34.04	37.37
KRH51142	Soybean	endoplasmic reticulum, nucleus	33.87	36.8
KRH02012	Soybean	endoplasmic reticulum, plastid	32.41	34.78
KRH15565	Soybean	extracellular	7.13	34.11
Zm00001d037466_P002	Maize	cytosol	6.32	32.5
KRH25835	Soybean	cytosol	10.7	31.58
Zm00001d013450_P001	Maize	cytosol, plastid	12.32	26.12
KRG99300	Soybean	cytosol	11.35	23.1
KRH71808	Soybean	cytosol	6.32	21.31

Protein Annotations

KEGG:00010+2.7.1.11	KEGG:00030+2.7.1.11	KEGG:00051+2.7.1.11	KEGG:00052+2.7.1.11	KEGG:00680+2.7.1.11	Gene3D:1.10.10.480
EntrezGene:100800863	MapMan:2.1.1.1.2	Gene3D:3.40.50.450	Gene3D:3.40.50.460	EMBL:ACUP02004386	EnsemblPlantsGene:GLYMA_07G160500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003872	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0046835	GO:GO:0046872
GO:GO:0047334	GO:GO:0061615	UniProt:I1KKN7	EnsemblPlants:KRH49514	ProteinID:KRH49514	ProteinID:KRH49514.1
HAMAP:MF_01980	PFAM:PF00365	PIRSF:PIRSF005677	InterPro:PKF_sf	PANTHER:PTHR43650	PANTHER:PTHR43650:SF2
MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-7385	InterPro:PfpB_PPi_PFK	InterPro:Phosphofructokinase_dom
SUPFAM:SSF53784	TIGRFAMs:TIGR02477	UniParc:UPI00023391E6	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:20696808..20702646

Molecular Weight (calculated)

67440.4 Da

IEP (calculated)

7.301

GRAVY (calculated)

-0.061

Length

617 amino acids

Sequence
(BLAST)

001: MDSDYGIPRE LSDLQKIRSL YQPELPPCLQ GTTVRVEFGD ATTTADPTDA LTISRAFPNT YGHPLAHFLR ATAKVPDAQI ITEFPPIRVG IVFCGRQSPG
101: GHNVIWGLHN ALKIHNPNSV LLGFLGGSEG LFAQKTLEIT EDILSTYKNQ GGYDLLGRTK DQIRTTEQVN AALAACNNLK LDGLVIIGGV TSNTDAAQLA
201: ETFAVAKCPT KVVGVPVTLN GDLKNQFVET NVGFDTICKV NSQLISNVCT DALSAEKYYY FIRLMGRKAS HVALECTLQS HPNMVILGEE VAASKLTLSE
301: IAKQITDAVQ ARAEQDKYHG VILLPEGLIE SIPEVYALLK EIHGLLRQGV AVDKISSQLT PWASALFEFL PPFIRRQLLL YPESDDSAQL SQIETEKLLA
401: YLVEVEINKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH ICYHILAAGL NGYMATVTNL KNPVNKWRCG AAPIASMMTV KRWSPNPGAT
501: SIGKPAIHPA TVDLRGKAYE LLRQKAQSFL MDDIYRNPGP LQFDGPGAGA KVITLSVEDQ DYMGRIKKLQ EYLEQVRTIV KPGCPQEVLK AALSVMASVT
601: EVLAAMSTSS TNTLSAM

Best Arabidopsis Sequence Match ( AT1G76550.1 )
(BLAST)

001: MDSDFGIPRE LSPLQQLRSQ YHPELPPCLQ GTTVRVELGD GTTVAKAGDA HIIARAFPHT LGQPLAHFLR ATAKVADAQI ITEHPVKRVG IVFCGRQAPG
101: GHNVVWGLYE ALKVHNAKNT LLGFLGGSEG LFAQKTLEIT DEVLQTYKNQ GGYDMLGRTK DQIRTTEQVN AALKACTDLK LDSLVIIGGV TSNTDAAHLA
201: EFFAEAKCST KVVGVPVTIN GDLKNQFVEA NVGFDTTCKV NSQLISNICT DALSAEKYYY FVRLMGRKHS HVALECTLQS HPNMVILGEE VTASKLTIFD
301: IIKQICDAVQ ARAEQDKNHG VILIPEGLVE SIPELYALLK EIHGLLKEGV QVDNISTQLS SWSSALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA
401: YLVETEMNKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH VCYHILAAGL NGYMATVTNL KSPVNKWKCG AAPISAMMTV KRWSQNSGST
501: TIGRPVIHPA SVDLKGKAYD LLRQNAQKFL MEDMYRNPGP VQYDGPGADA KAVSLCVEDQ DYMGKIKKLQ EYLDQVRTIV KPGCSQDVLK AALSVMASVT
601: DVLTTISSSS TSGQQFA

Arabidopsis Description

PFP-ALPHA2Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.