CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
extracellular 1
plastid 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36515	Soybean	endoplasmic reticulum, mitochondrion	97.69	97.69
KRH71798	Soybean	cytosol	16.73	87.85
KRH51142	Soybean	endoplasmic reticulum, nucleus	87.37	86.44
VIT_10s0116g00360.t01	Wine grape	cytosol, plastid	84.7	84.25
GSMUA_Achr8P22590_001	Banana	cytosol, plastid	84.52	84.22
KRH33517	Soybean	cytosol	15.12	84.16
GSMUA_Achr7P02210_001	Banana	plastid	84.16	83.87
KRH02012	Soybean	endoplasmic reticulum, plastid	84.7	82.78
Zm00001d037278_P001	Maize	plastid	81.67	81.38
Bra029482.1-P	Field mustard	cytosol	81.32	80.46
TraesCS7A01G198200.2	Wheat	golgi, plastid	79.89	80.18
TraesCS7D01G200800.1	Wheat	plastid	79.89	80.18
TraesCS7B01G104400.1	Wheat	plastid	79.72	80.0
Os06t0247500-01	Rice	plastid	80.61	79.89
AT4G04040.1	Thale cress	cytosol	80.61	79.61
Zm00001d044754_P001	Maize	extracellular, plastid	81.49	78.97
GSMUA_Achr3P08040_001	Banana	cytosol, mitochondrion	84.34	77.83
CDX94541	Canola	cytosol	81.14	71.92
HORVU7Hr1G040550.9	Barley	cytosol, peroxisome, plastid	77.05	65.02
KRH25835	Soybean	cytosol	22.78	61.24
KRH15565	Soybean	extracellular	13.7	59.69
KRH71808	Soybean	cytosol	19.22	59.02
KRG99300	Soybean	cytosol	21.17	39.27
KRH49514	Soybean	cytosol, endoplasmic reticulum, nucleus	37.37	34.04
KRG89187	Soybean	endoplasmic reticulum	37.01	33.71
OQU89184	Sorghum	cytosol	4.8	21.77

Protein Annotations

KEGG:00010+2.7.1.11	KEGG:00030+2.7.1.11	KEGG:00051+2.7.1.11	KEGG:00052+2.7.1.11	KEGG:00680+2.7.1.11	Gene3D:1.10.10.480
EntrezGene:100804429	MapMan:2.1.1.1.2	Gene3D:3.40.50.450	Gene3D:3.40.50.460	EMBL:ACUP02009213	InterPro:ATP_PFK
EnsemblPlantsGene:GLYMA_15G112300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003872	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006002	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0046835	GO:GO:0046872	GO:GO:0047334	GO:GO:0061615	UniProt:I1MFL2	EnsemblPlants:KRH11497
ProteinID:KRH11497	ProteinID:KRH11497.1	HAMAP:MF_01980	PFAM:PF00365	PIRSF:PIRSF005677	InterPro:PKF_sf
PRINTS:PR00476	PANTHER:PTHR43650	PANTHER:PTHR43650:SF6	MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484
MetaCyc:PWY-7385	InterPro:PfpB_PPi_PFK	InterPro:Phosphofructokinase_dom	SUPFAM:SSF53784	TIGRFAMs:TIGR02477	UniParc:UPI000233C002
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:8833191..8839767

Molecular Weight (calculated)

61267.9 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.146

Length

562 amino acids

Sequence
(BLAST)

001: MAPTTTVPIG TLPSGSVTGR LASVYSEVQK TRVDHALPLP SVLKHPFTIL DGPPSSAAGN PDEIAKLFPH LFGQPSAALA PSGAVQTQKK LKIGVVLSGG
101: QAPGGHNVIS GIFDYLQERA PGSTLYGFKG GPAGIMKCKY VELTSEYIYP YRNQGGFDMI CSGRDKIETP EQFKQAEETA KKLDLDGLVV IGGDDSNTNA
201: CLLAENFRSK NLKTSVIGCP KTIDGDLKCK EVPTSFGFDT ACKIYSEMIG NVMIDARSTG KYYHFVRLMG RAASHITLEC ALQTHPNITI IGEEVAAKKL
301: TLKNVTDYIV DVVCKRAEIN YNYGVILIPE GLIDFIPEVQ HLIAELNEIL AHDTVDEGGL WKKKLTDQSL KLFDFLPQAI QEQLMLERDP HGNVQVAKIE
401: TEKMLIQMVE TELEKRKQEG KYNGEFKGQS HFFGYEGRCG LPTNFDATYC YALGYGAGAL LHSGKTGLIS SVANLCAPVE EWTVGGTALT SLMDVERRHG
501: KFKPVIKKAM VELEGAPFKK FASLRDEWAL KNCYISPGPI QFSGPGSEVI NHTLLLELEA LA

Best Arabidopsis Sequence Match ( AT1G12000.1 )
(BLAST)

001: MAPALAVTRD LTAVGSPENA PAKGRASVYS EVQSSRINNT LPLPSVLKGA FKIVEGPASS AAGNPDEIAK LFPGLYGQPS VAVVPDQDAP SSAPKLKIGV
101: VLSGGQAPGG HNVISGLFDY LQERAKGSTF YGFKGGPAGI MKCKYVELNA EYIQPYRNQG GFDMICSGRD KIETPDQFKQ AEETAKKLDL DGLVVIGGDD
201: SNTNACLLAE NFRSKNLKTR VIGCPKTIDG DLKCKEVPTS FGFDTACKIY SEMIGNVMID ARSTGKYYHF VRLMGRAASH ITLECALQTH PNITIIGEEV
301: SAQKQTLKNV TDYMVDVICK RAELGYNYGV ILIPEGLIDF IPEVQELIAE LNEILANEVV DENGLWKKKL TEQSLKLFDL LPEAIQEQLM LERDPHGNVQ
401: VAKIETEKML IQMVETELEK RKQAGAYKGQ FMGQSHFFGY EGRCGLPTNF DATYCYALGY GAGVLLNSGK TGLISSVGNL AAPVEEWTVG GTALTALMDV
501: ERRHGKFKPV IKKAMVELEG APFKKFASLR EEWALKNRYI SPGPIQFTGP GSDSLSHTLL LELGAQ

Arabidopsis Description

PFP-BETA1Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4M5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.